Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00528 ATGGTACTTCAAGCTTTGTCAGTGCCCGCGAGTGCCAGCTTCACTATAGCTTCTCGCTCCAGAACTCCCTCCCACCTTGTGTTTTCTCACAGAAACCCCTGTTCGATAGCTTCTTCTTTTCCTAGCCCATATGGCAATTCATCAGAAGATGGGTTATCAAGTAAAAGCCGTGGCTTTCGTTTAAAATTTGATGAGAAAAATATCTATGGTGCTACTACAAGTTATGGGGCAATTGAAGCCAAGAAGGGGAACCCACCAATAACACCAGCAGTGATAACTCCCGAAGGACCTCTTGATCTGTCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGGCAGCCAATCAATTCACAAGTGGCTCAGAGAGTTATATCACAGCTTGTGACTCTTGCTACAATTGATGAAAAATCAGATATACTGGTATATCTAAATTGCCCTGGTGGAAGCTCGTATTCAGTGTTGGCAATTTATGATTGCATGTCTTGGATAAAGCCCAAGGTTGGTACTGTGTGTTTTGGAGTAGCTGCAAGCCAAGGAGCACTTCTTCTTGCTGGAGGAGAGAAGGGAATGCGCTATGCAATGCCAAATGCTCGCATTATGATACATCAACCACAGAGTGGATGTGGGGGTCATGTTGAGGATGTCAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTATAGTGCTTTTACGGGGCAACCACTAGAGAAGGTGCAGCAGTACACAGAGAGGGACCGTTTTCTGTCTGTTTCTGAGGCTTTGGAGTTTGGTCTGATTGATGGTGTCCTGGAAACAGAGTATTGA 825 0.4424 MVLQALSVPASASFTIASRSRTPSHLVFSHRNPCSIASSFPSPYGNSSEDGLSSKSRGFRLKFDEKNIYGATTSYGAIEAKKGNPPITPAVITPEGPLDLSSVLFRNRIIFIGQPINSQVAQRVISQLVTLATIDEKSDILVYLNCPGGSSYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFTGQPLEKVQQYTERDRFLSVSEALEFGLIDGVLETEY 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00528 274 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 87 273 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco9g00528 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 71 273 IPR023562 -
Phco9g00528 274 SUPERFAMILY ClpP/crotonase 97 272 IPR029045 -
Phco9g00528 274 Gene3D - 80 274 - -
Phco9g00528 274 FunFam ATP-dependent Clp protease proteolytic subunit 79 274 - -
Phco9g00528 274 Pfam Clp protease 99 272 IPR023562 -
Phco9g00528 274 ProSitePatterns Endopeptidase Clp histidine active site. 192 205 IPR033135 -
Phco9g00528 274 CDD S14_ClpP_2 99 269 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco9g00528 274 PRINTS Clp protease catalytic subunit P signature 248 267 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco9g00528 274 PRINTS Clp protease catalytic subunit P signature 170 187 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco9g00528 274 PRINTS Clp protease catalytic subunit P signature 191 210 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco9g00528 274 PRINTS Clp protease catalytic subunit P signature 139 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco9g00528 274 PRINTS Clp protease catalytic subunit P signature 99 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00528 Phco-Chr9 3826817 3830006 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00528 9 3826817 3830006 Phco9g00528 9 3826817 3830006 ECH