Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00524 ATGGAGGAGAAACGCCGCGACGCTGCTCCCTCCACCGCAGATTCCCCGGCATCGGAGCCCGCATCGTCTCGCCGCCGCGCCGGAGGTAACAAGCGCAAGTCCGCCGCTCTCAACGCCTCCGGTTCATCCTCCGCCCCCTCCAAACGCGCCGCTCGCGACAAGGCCTCGCCGCTCCACCCTCCTCCCCTCCACAATGGCCCCCTCACCCGGGCCCGCCAAACCCCCAACTCCGTCGCCGCATCCTCTTCAGCTGGTGCTTCCACTCCCGCCGCCGTCAAACACTCCGAACGTACCCACCCCTCCGCCGCCGACTCCGCCGCGCTCGCCGAGCAGCTCAGGAAGGAGAGCGAGTGGGAGACTCTGGAGGCCGCGATTGAAGCGGAATTCGAAGCCATCAGATCTCGCGGTGCCAATGCGCATGTGGTTCCCACTCATTGCGGTTGGTTTTCATGGTTGTATATTCATGAAATTGAGAAGCAAATGTTGCCTTCTTTCTTTAACGGCAAAATTGAAAATCGGACACCTGATGTATACATGGAGATACGAAATTGGATAATGAAGAAGTTTCATTCAAATCCCAATGTGCAAGTTGAATTGAAAGATATGTCACAGCTTAATGTTGGAGACATGGAAGCTAGGCAAGAAGTAATGGAGTTTTTGGACTATTGGGGTTTAATTAACTTCCACCCATTCCCTTCAATGGATTCTACTGTGGTCACTGCCAGTGATGACGGAGAAGCAGAAAAGAGTTCTTTACTTGAAAAATTGTATCACTTTGAAACTCTCCAATTATGTCGACCTGTTCAAAGGTCTAGCCAAATGACTCCAGCTACAGCCTCTGGCTTGTTTCCAGAGTCTACTATTGCTGAAGAGTTGGTGAAACAAGAGGGGCCAGCTGTTGAGATGCTTGAGTACCATTGCAACTCATGTTCTGCTGATTGTTCTCGCAAACGTTACCATTGCCAGAAGCAGGCAGATTTTGATCTGTGTTCCGACTGCTTTAGTAATAGAAGATTTGGCTCTGGCATGTCTTCATTGGATTTTATACTCATGGAACCAGCTGAAGTTGCAGGGGTTAATGGTGGAAAGTGGACTGATCAAGAGACCCTTCTGCTCCTTGAAGCCTTAGAACTTTATAAAGAAAATTGGAATGAAATTGCAGAACATGTTGGAACTAAAACAAAAGCTCAGTGCATATCGTACTTTGTTCAAATGCCAATTGAGGATGCCTTTGCTGAATGTGAAGATAATGTTGATGCTGGTTGCAAAGAACAAACAGATCCAGTTGCAACAAACAATGACTCATCTATGGACAAGGATGCTTCAGAGTGTATTGAGAATGATACTAGTGATGGCATCAAAGACCAGGATAAAACTTCCAAGGCTGAGGATGTTGAAGTGAAGGTGAATCAGGAGGAGAATCTAAAGTTACAAGGTAGTGATGAGAAAGCTAGTGAGGGAACTTCTAAATCTGAAGATGCTGTTAAGGGGAAGTCTGATCAGGAAGCAGGCAATGAATGTGCTATAAATGCTCTTAAGGAAGCATTTGCTGCTGTTGGTTATTCTCCTGGACCTGAAGGACCTTCTTCATTTGCTGAAGTGGGTAATCCTGTCATGGCACTGGCAACTTTCCTTGCACACTTGGTGGGTACTGATGTGGCTGTTGCTTCAGCTCATAGCTCCATAAAATCCATGTCAAGAAATTCTCCTGGCACTGACCTTGCTGCAAGGTGTTGCTTTCTTCTCGAAGATCCACCAGATAATAAGAATGATCCAACTAGTTCTGAGAGGGATTCTAAAAGTGATGGAGATCAGAACGAAGTAAATGTAAAGAAGGATAAACCAATGTTGGATGATAACGATTTACCAAATGATCACAATAATATGAAAATTGGAAGTAACACTTTACAAGACAAGGGACAGCCAGCTTCCACAGAAGATGCATCCTCAGAAAAGCCAATTTCTTCAAAGGAGCAACCAATGGTTAATCATGAGAGTGGGCTTGACAATTGCAATGTAATCAATGCAAAGCTATCCAATGATCAAGCACCAGACACTCTGCATAATTCAGGTGGTTCAACGTCCAAGGATGAAACTAAATCTAATTCTGACCAGGTTCAGAAGGGAACCTTAATTGAAGAACCTAGTCCTTCTGCAAAGGGCATATGTGTGTCTGATTCTCTTCCATCAGAGAAGAAAGAACTTCAGTCACTTAAAGCCAATTTACCAGAAGAGTGCCCAAAGCTGATAGAGAAGACATCACAATGTGAGATGGTCTCTGACTCTACTCCCCCAACTAAGAACAAGTCTCAAAATCCACAATCTACAAATCCAGTTTGTGAATCTGTAGAAACAACAGATTCAGCCATGGATGTTGATGGAGTTTCTAATTCCTTGCCATCAGAAAAGGTTGACTCTCAAGCACTAGTTACAACAAAATCATCCCGGTGTAATGGGACAGAAATAGATGTAGACATGATGTCACCATCAAATCTAGTTAGACCAAATTCTGGTGCTGAAAATGGTGCAAATACAGGGACAGGTAAAGATCATGCAGATAATGGAGCAAAAGTGGAAGATAATGATACAAGGATTAAACAGGACAGCAATTTTGAAAAAATGAAACGGGCTGCAGTTTCTACACTTGCTGCAGCAGCAGTAAAAGCAAAAGTTCTAGCAAATCAGGAAGAAGACCAAATCCGACAGCTTACTTCCTTGTTGATAGAAAAACAGTTGCTCAAGTTGGAAACTAAGTTGGCTTTTTTCAATGATGTGGAGAACGTGGTGTTGAGGGCAAGGGAGCATGTAGAGCGATCAAGGCATAAGCTTTATCACGAGCGTGCTTTGATTATTGCATCGCGGCTTGGTATACCAGCTTCCTCCTCTAGAGGTGTACCAGCAACTGTATCAACTAATAGAATTCCTACAAATATTGCGAACTCACTCCCAAGACCACAAATGATGATGAGTCCACAGAGGCCACTTATTTCTAGACCTGCAGGCCCTGTAGCTACTACTCTGCAAAACCCATTAGCATCTTCGACTGCAGCAGGAAATTCAGTTCGGCCATCTAACCAGGAAAAACTTTCTTCTGTTGGGACAAAATAA 3108 0.4479 MEEKRRDAAPSTADSPASEPASSRRRAGGNKRKSAALNASGSSSAPSKRAARDKASPLHPPPLHNGPLTRARQTPNSVAASSSAGASTPAAVKHSERTHPSAADSAALAEQLRKESEWETLEAAIEAEFEAIRSRGANAHVVPTHCGWFSWLYIHEIEKQMLPSFFNGKIENRTPDVYMEIRNWIMKKFHSNPNVQVELKDMSQLNVGDMEARQEVMEFLDYWGLINFHPFPSMDSTVVTASDDGEAEKSSLLEKLYHFETLQLCRPVQRSSQMTPATASGLFPESTIAEELVKQEGPAVEMLEYHCNSCSADCSRKRYHCQKQADFDLCSDCFSNRRFGSGMSSLDFILMEPAEVAGVNGGKWTDQETLLLLEALELYKENWNEIAEHVGTKTKAQCISYFVQMPIEDAFAECEDNVDAGCKEQTDPVATNNDSSMDKDASECIENDTSDGIKDQDKTSKAEDVEVKVNQEENLKLQGSDEKASEGTSKSEDAVKGKSDQEAGNECAINALKEAFAAVGYSPGPEGPSSFAEVGNPVMALATFLAHLVGTDVAVASAHSSIKSMSRNSPGTDLAARCCFLLEDPPDNKNDPTSSERDSKSDGDQNEVNVKKDKPMLDDNDLPNDHNNMKIGSNTLQDKGQPASTEDASSEKPISSKEQPMVNHESGLDNCNVINAKLSNDQAPDTLHNSGGSTSKDETKSNSDQVQKGTLIEEPSPSAKGICVSDSLPSEKKELQSLKANLPEECPKLIEKTSQCEMVSDSTPPTKNKSQNPQSTNPVCESVETTDSAMDVDGVSNSLPSEKVDSQALVTTKSSRCNGTEIDVDMMSPSNLVRPNSGAENGANTGTGKDHADNGAKVEDNDTRIKQDSNFEKMKRAAVSTLAAAAVKAKVLANQEEDQIRQLTSLLIEKQLLKLETKLAFFNDVENVVLRAREHVERSRHKLYHERALIIASRLGIPASSSRGVPATVSTNRIPTNIANSLPRPQMMMSPQRPLISRPAGPVATTLQNPLASSTAAGNSVRPSNQEKLSSVGTK 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00524 1035 Pfam SWIRM-associated region 1 881 958 IPR032451 -
Phco9g00524 1035 SMART zz_5 301 345 IPR000433 GO:0008270
Phco9g00524 1035 SUPERFAMILY Homeodomain-like 137 236 IPR009057 -
Phco9g00524 1035 SUPERFAMILY Homeodomain-like 359 410 IPR009057 -
Phco9g00524 1035 MobiDBLite consensus disorder prediction 995 1035 - -
Phco9g00524 1035 ProSiteProfiles Zinc finger ZZ-type profile. 302 356 IPR000433 GO:0008270
Phco9g00524 1035 MobiDBLite consensus disorder prediction 69 89 - -
Phco9g00524 1035 MobiDBLite consensus disorder prediction 35 49 - -
Phco9g00524 1035 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 359 398 IPR017930 -
Phco9g00524 1035 MobiDBLite consensus disorder prediction 755 781 - -
Phco9g00524 1035 MobiDBLite consensus disorder prediction 439 500 - -
Phco9g00524 1035 MobiDBLite consensus disorder prediction 425 502 - -
Phco9g00524 1035 MobiDBLite consensus disorder prediction 1002 1035 - -
Phco9g00524 1035 ProSitePatterns Zinc finger ZZ-type signature. 307 333 IPR000433 GO:0008270
Phco9g00524 1035 SMART sant 360 408 IPR001005 -
Phco9g00524 1035 MobiDBLite consensus disorder prediction 589 625 - -
Phco9g00524 1035 MobiDBLite consensus disorder prediction 626 712 - -
Phco9g00524 1035 Pfam Myb-like DNA-binding domain 362 404 IPR001005 -
Phco9g00524 1035 MobiDBLite consensus disorder prediction 582 725 - -
Phco9g00524 1035 Pfam Zinc finger, ZZ type 304 339 IPR000433 GO:0008270
Phco9g00524 1035 ProSiteProfiles SANT domain profile. 363 410 IPR017884 -
Phco9g00524 1035 MobiDBLite consensus disorder prediction 820 848 - -
Phco9g00524 1035 Pfam SWIRM domain 143 228 IPR007526 GO:0005515
Phco9g00524 1035 MobiDBLite consensus disorder prediction 820 863 - -
Phco9g00524 1035 MobiDBLite consensus disorder prediction 753 781 - -
Phco9g00524 1035 Gene3D - 146 231 IPR036388 -
Phco9g00524 1035 FunFam SWI/SNF complex subunit SMARCC2 isoform C 360 410 - -
Phco9g00524 1035 CDD ZZ_RSC8 305 349 IPR041984 -
Phco9g00524 1035 MobiDBLite consensus disorder prediction 1 110 - -
Phco9g00524 1035 CDD SANT 380 405 IPR001005 -
Phco9g00524 1035 Gene3D - 359 410 - -
Phco9g00524 1035 PANTHER SWI/SNF COMPLEX-RELATED 80 955 - -
Phco9g00524 1035 SUPERFAMILY RING/U-box 297 350 - -
Phco9g00524 1035 Gene3D - 299 348 IPR043145 -
Phco9g00524 1035 ProSiteProfiles SWIRM domain profile. 140 237 IPR007526 GO:0005515
Phco9g00524 1035 ProSiteProfiles Myb-like domain profile. 356 406 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00524 Phco-Chr9 3793622 3799065 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00524 9 3793622 3799065 Phco9g00524 9 3793622 3799065 ECH