Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00516 ATGGCTACACACTCTAACACTTCATTCCTCCTCCAACTTTCCCTCATCATCACTGCACTCTACACTGCTGTTTCGCAACCCTTCATCGGCGTGAACTACGGCCAGGTCGCGGACAACCTTCCGGCGCCGGAGGTCTCGGCAGAGCTTCTCAAGTCTACCACCGTCGGAAAAGTCCGCCTTTACGGTGCAGATCCGGCGATCATAAAGGCGCTAGCGAACTCCGGCATTGGAATCGTCATCGGGGCGGCCAACGGCGACATTCCGAGTTTGGCCTCTGATCCTGACTCGGCGACTCAATGGGTCAACGCGAACGTGTTGCCACATTACCCCGAAAGCAACATCACTCTGATCGCCGTCGGCAACGAGATCATAAAGTCCGGCGACGATGGCCTCGCCTCGCAGCTTCTCCCTGCGATGCAAAATGTCCAGAATGCCCTCAACTCGGCCTCACTCGGTGGCAAAATAAAAGTTTCGACGGTGCATTCTATGGCCGTGTTGACTCAGTCGGAGCCTCCCTCGGCCGGGTCGTTCGACCCGGCTTTGATGGATATCCTCCAACCGTTGGTAGCTTTTCTGAAGAATAACGAGTCACCTTTCGCCATCAACCCATACCCGTTCTTCGCTTACCAGAGCGACCCGAGACCTGAAACACTCGCATTCTGTCTATTTCAACCACATTCGGGTCGGGTCGATCAGGGCAGCGGGAAGGTTTATTCCAACATGTTCGACGCTCAGGTGGATGCTGTGCACAGTGGTTTGAGCAGTATGGGGTTGGAGGACATGGAGATTGTGATTGCTGAGACAGGATGGCCCTCTCGTGGGGACACCAATGAAGTAGGAGCCACTCTTGAAAACGCCAGGGCCTATAATGGAAACCTCATTGCACACCTTAGATCAATGGTTGGGACTCCTTCCATGCCTGGCAAATCTGTGGACACGTTCATTTTTGCACTCTATGATGAGGATTTGAAACCTGGTCCAGCATCTGAGAGAGCGTTTGGCCTGTTCAAAACTGATCTTACAATGGCATATGATGTTGGTCTAGACAAATCTAGCACAGGCCATAAGAATCCACCAACTCCAGTTCCCAAAAGGGAAACACAATGGTGCATCCCAAAAGTGGAAGTGAGTGAAGCCCAATTGCAGACAAATGTTGATTATATCTGTGGTAGCCAAGTTATAGATTGTGGACCAATTCAACCAGGAGGGGCTTGTTATGAACCTAACACGGTCTTATCTCATGCTGCCTTTGCTATGAATCTCTACTACCAGAAGGTTGGAAGAAATCCATGGAACTGTGATTTCTCTCAAACAGCAATGCTTACATCTCAAAATCCAAGTTACAGTGCTTGTGTTTATCCTGGTGAAAGTACCTGA 1377 0.5062 MATHSNTSFLLQLSLIITALYTAVSQPFIGVNYGQVADNLPAPEVSAELLKSTTVGKVRLYGADPAIIKALANSGIGIVIGAANGDIPSLASDPDSATQWVNANVLPHYPESNITLIAVGNEIIKSGDDGLASQLLPAMQNVQNALNSASLGGKIKVSTVHSMAVLTQSEPPSAGSFDPALMDILQPLVAFLKNNESPFAINPYPFFAYQSDPRPETLAFCLFQPHSGRVDQGSGKVYSNMFDAQVDAVHSGLSSMGLEDMEIVIAETGWPSRGDTNEVGATLENARAYNGNLIAHLRSMVGTPSMPGKSVDTFIFALYDEDLKPGPASERAFGLFKTDLTMAYDVGLDKSSTGHKNPPTPVPKRETQWCIPKVEVSEAQLQTNVDYICGSQVIDCGPIQPGGACYEPNTVLSHAAFAMNLYYQKVGRNPWNCDFSQTAMLTSQNPSYSACVYPGEST 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00516 458 Gene3D - 364 454 - -
Phco9g00516 458 SUPERFAMILY (Trans)glycosidases 29 346 IPR017853 -
Phco9g00516 458 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 20 442 IPR044965 GO:0004553|GO:0005975
Phco9g00516 458 FunFam glucan endo-1,3-beta-glucosidase 7 364 454 - -
Phco9g00516 458 ProSitePatterns Glycosyl hydrolases family 17 signature. 261 274 IPR000490 GO:0004553|GO:0005975
Phco9g00516 458 FunFam Glucan endo-1,3-beta-glucosidase 14 27 353 - -
Phco9g00516 458 Gene3D Glycosidases 28 356 - -
Phco9g00516 458 Pfam Glycosyl hydrolases family 17 29 346 IPR000490 GO:0004553|GO:0005975
Phco9g00516 458 SMART X8_cls 368 453 IPR012946 -
Phco9g00516 458 Pfam X8 domain 368 440 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00516 Phco-Chr9 3759477 3763725 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00516 9 3759477 3763725 Phco9g00516 9 3759477 3763725 ECH