Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00487 ATGAGGAAGACGATAGTGATTCCACTTTATTTGTTGTGCAGGCTTTTGAGTCCTCCGATGGCAAGTGATTCCTTTGTGATTTCCAATGGCAATGGAAATGGCAATGGCAATGGAAATGGGAAGTCAGAGCCTCTTCCACAGAGGACTTACCAAGCAGTAGTGATTGCGACGAGAGATATGGGCATTTCTAAGGATGGAAAATTGCCCTGGATGTTACCCACTGATCTCAAATTTTTTGATGAGATCACTTCTATAACGTCTGATCCGGGGAAGAAGAATGCTGTTGTGATGGGTAGAAAAACATGGGAGAGTATCCCTCCTGAGAATAGGCCTCTTCCTGGTCGCCTTAATGTTGTTCTGACTCGCTCGGGTAGCTTTGATATTGCAACTGCAGAGAATGTTGTCATATGTGGAAGTGTCTCTTCTGCTATGGAACTGTTGGCTGCTTCTCCGTACTGCCTGTCAATTGAGAAAGTATTTCTTACAGGAGGTGGTGAGATTTTCAGAGTGGCTCTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAAATTGAGGCAAGCATTGAGTGTGACGTTTTCATGCCTCGAGTTGATACCTCTCTATTTCAGCCATGGTATTCATCATTTCCTTTGGTGGAAGACAACCTCCGCTATTCTTTCACCACTTATGTACGTGTAAGGAGTTCTCCGGCAGAGTCCCTGGGTCAGAATGCTGATCCATTTTTTGATAATGATTCAGACTCTTTCAAATTTGAGGTCAATAAATTTTCTTTTCTTCCAAAATTCATTCATGAAAGACATGAGGAGTTTAAGTATCTCAGGTTGGTTCAAGAAATTATTTCTGAAGGCACAATTAAGGATGATAGGACAGGGACTGGTACCTTGTCGAAATTTGGCTGCCAGATGAGGTTTAATCTGCGCAGAAACTTTCCGCTTCTAACAACCAAGAAAGTATTTTGGCGAGGGGTTGTTGAGGAGCTTCTTTGGTTTATCAGCGGCTCAACAAGTGCCAAGGTGCTGCAAGAAAAAGGCATTCATATCTGGGATGGCAATGCATCTAGAGAATACCTTGATAGCATTGGTTTGAGAGAAAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGAGCCAAGTATACTGACATGCATGCTGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGTCGGATCATTCTTTCAGCTTGGAATCCATCTGATCTTAAATCGATGGCACTTCCCCCCTGCCACATGTTTGCACAGTTTTACGTAGCAAATGGGGAATTGTCGTGTCAAATGTATCAGCGATCTGCGGACATGGGCCTGGGGGTGCCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCCGGGTGATTTTAATCATGTTATTGGGGATGCACATGTTTACCGCAATCATGTTAGACCTTTGCAGGAACAGCTTCAGAATCAACCAAAACCTTTTCCGATTTTGAAGATAAACCCGAAGAAGAAAGATATAGATTCTTTTGTGGCTGCCGATTTCAAGCTCATAGGATATGACCCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAG 1662 0.4296 MRKTIVIPLYLLCRLLSPPMASDSFVISNGNGNGNGNGNGKSEPLPQRTYQAVVIATRDMGISKDGKLPWMLPTDLKFFDEITSITSDPGKKNAVVMGRKTWESIPPENRPLPGRLNVVLTRSGSFDIATAENVVICGSVSSAMELLAASPYCLSIEKVFLTGGGEIFRVALNAPGCEAAHITEIEASIECDVFMPRVDTSLFQPWYSSFPLVEDNLRYSFTTYVRVRSSPAESLGQNADPFFDNDSDSFKFEVNKFSFLPKFIHERHEEFKYLRLVQEIISEGTIKDDRTGTGTLSKFGCQMRFNLRRNFPLLTTKKVFWRGVVEELLWFISGSTSAKVLQEKGIHIWDGNASREYLDSIGLREREEGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKSMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFNHVIGDAHVYRNHVRPLQEQLQNQPKPFPILKINPKKKDIDSFVAADFKLIGYDPHQKIEMKMAV 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00487 553 CDD DHFR 52 225 IPR001796 GO:0004146|GO:0046654
Phco9g00487 553 PIRSF DHFR-TS 35 553 IPR012262 GO:0004146|GO:0004799|GO:0006730
Phco9g00487 553 PANTHER THYMIDYLATE SYNTHASE 1 72 553 IPR045097 GO:0016741
Phco9g00487 553 CDD TS_Pyrimidine_HMase 273 506 IPR023451 -
Phco9g00487 553 PRINTS Thymidylate synthase family signature 486 503 IPR000398 GO:0004799|GO:0006231
Phco9g00487 553 PRINTS Thymidylate synthase family signature 430 445 IPR000398 GO:0004799|GO:0006231
Phco9g00487 553 PRINTS Thymidylate synthase family signature 404 423 IPR000398 GO:0004799|GO:0006231
Phco9g00487 553 PRINTS Thymidylate synthase family signature 448 474 IPR000398 GO:0004799|GO:0006231
Phco9g00487 553 PRINTS Thymidylate synthase family signature 311 332 IPR000398 GO:0004799|GO:0006231
Phco9g00487 553 Hamap Thymidylate synthase [thyA]. 270 553 IPR000398 GO:0004799|GO:0006231
Phco9g00487 553 NCBIfam thymidylate synthase 272 553 IPR000398 GO:0004799|GO:0006231
Phco9g00487 553 Pfam Dihydrofolate reductase 51 226 IPR001796 GO:0004146|GO:0046654
Phco9g00487 553 Pfam Thymidylate synthase 272 553 IPR023451 -
Phco9g00487 553 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 34 227 - -
Phco9g00487 553 ProSitePatterns Thymidylate synthase active site. 415 443 IPR020940 GO:0004799|GO:0006231
Phco9g00487 553 SUPERFAMILY Dihydrofolate reductase-like 50 226 IPR024072 -
Phco9g00487 553 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 49 226 IPR001796 GO:0004146|GO:0046654
Phco9g00487 553 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 262 553 IPR036926 -
Phco9g00487 553 Gene3D Dihydrofolate Reductase, subunit A 36 228 IPR024072 -
Phco9g00487 553 FunFam Possible thymidylate synthase 264 553 - -
Phco9g00487 553 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 258 553 IPR036926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00487 Phco-Chr9 3572061 3576082 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00487 9 3572061 3576082 Phco9g00487 9 3572061 3576082 ECH