Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00468 ATGGCGTCCTTTGTGGCGCAAATAGAGATTGATCTGAGAGACGGTGCTTGTGATCGAGGGAAGATGCTTACCAAGTTCGAGACCAAAAGTAATAGAGTGAAGGGACTCAGTTTCCACAGCAAGAGACCCTGGATCCTCGCGAGTCTTCACAGTGGCGTGATCCAGCTATGGGATTACCGAATGGGGACCCTTATTGACAGATTCGACGAGCATGATGGTCCTGTCAGAGGTGTTCATTTCCATAATTCTCAGCCCCTATTTGTCTCTGGAGGGGATGATTACAAGATTAAGGTTTGGAACTATAAGATGCATAGGTGTTTGTTCACTCTTTTAGGACACCTTGATTATATCCGCACTGTGCAATTTCATCATGAAAACCCGTGGATTGTGAGTGCCAGTGATGATCAGACCATTCGCATTTGGAACTGGCAGTCACGGACCTGTATATCTGTTTTAACTGGACACAATCATTATGTTATGTGTGCTACATTCCATCCAAAAGAGGATATTGTTGTGTCAGCTTCCCTTGATCAGACTGTTCGTGTTTGGGATATTGGTTCTCTCAAAAGGAAGGCTGGGCCTCCTGCAGATGACATTCTACGATTGAGTCAGATGAACACAGATCTTTTTGGAGGTGTTGATGCAGTTGTTAAGTATGTTCTGGAAGGTCATGATCGGGGTGTCAACTGGGCTGCTTTTCATCCTACACTGCCTCTCATTGTCTCCGGAGCTGATGACCGACAAGTGAAACTTTGGAGGATGAATGATACTAAGGCATGGGAAGTGGATACTTTGAGAGGGCACATGAATAATGTTTCATGTGTTATGTTCCATGCCAAACAGGACATCATTGTGTCAAATTCCGAAGATAAGAGTATTCGAGTATGGGATGCCACAAAGCGGACTGGAATTCAAACTTTTCGCAGGGAGCATGATCGGTTTTGGATTCTTGCAACACATCCTGAAATGAATTTGTTGGCAGCTGGTCATGACAGTGGCATGATAGTCTTTAAGCTGGAGAGAGAAAGACCAGCTTTTGCAGTCAGTGGTGATTCATTATTTTATACAAAAGACCGATTCTTGCGTTTCTATGAATTTTCTACACAGAGAGAGACACAAATACTTACAATCAGACGACCTGGCTCTTCTAGTCTGAATCAATGTCCAAAAACTCTTTCCTATAGTCCTTCGGAAAATGCAATTCTTCTATGCTCAGATGTGGAAGGAGGATCTTATGAGTTATATTGCATATCGAAAGATGGCACAAAGGACAGTTTTGGCAGGGGTGATATGCAAGATCCAAAGAAAGGTCTTGGAGGATCTGCAGTCTTTGTGGCTCGGAATAGATTTGCCGTCCTTGACAAAGGTAGCAACCAAGTCTCTGTAAAAAATCTGAAAAATGAGCTTGTGAAAAAGAGCGCCCTCCCAACTGCTGCAGATGCTATATTCTATGCTGGAACTGGCAACTTGCTATGTAGGTCCGAGGATAGGGTTTTTATATTTGATCTACAACAGAGGATTGTTCTTGGTGATCTTCAGACCCCTTTTATAAAGTATGTAGTCTGGTCTAATGACATGGAAAATGTTGCTCTGCTCAGTAAACATGCGATTGTCATTGCTAGCAAGAAGCTTGTGCATCAATGCACCCTTCATGAGACAATCCGAGTAAAAAGTGGAGCATGGGATGACAATGGCATTTTTATTTACACTACATTAAATCATATCAAATACTGCCTCCCCAATGGAGATAGTGGGATAATAAAAACACTGGATGTCCCAATCTATATCACAAAGGTTATTGGAAACACCATCTTTTGCTTGGGTCGGGATGGGAAAAACAAGGCTATAACTGTTGATGCAACAGAATATATCTTTAAGCTTTCGTTGTTGAAGAAAAAATACGACCATGTAATGAACATGATAAGGAATTCACAGCTTTGTGGGCAGGCTGTGATTGCATATTTACAACAGAAAGGGTTTCCTGAAGTTGCCCTCCATTTTGTGAAAGATGAGAGAATCCGATTCAATTTGGCTTTGGAGAGTGGCAATATTCAAATTGCTGTTGCATCAGCAACAGCAATTGATGAAAAAGATCACTGGTACCGATTAGGGGTTGAAGCTCTTCGACAAGGTAACTCTGGTATAGTAGAGTATGCATACCAGAGGACCAAAAATTTTGAGAGACTATCATTCCTTTATCTCATTAATGGTAACGTGGACAAACTTTCAAAAATGTTGAAAATTGCTGAAGTGAAGAATGATGTGATGGGTCAGTTTCACAATGCCCTGTATATGGGCGACATAAAAGAGCGTGTCAAGATCTTGGAGAATGTGGGACATTTGCCTCTTGCTTACGTCACTGCATCAGTGCATGGGCTACATGATGTTGCTGAAAGGCTTGCAGCTGAACTCGGCGATAATATTCCATCTTTTCCCAAGGGAAAAGTACAATCTCTCTTGATACCACCATCACCTGTATTGTGTGGTGGTGATTGGCCCCTTCTCAGAGTCATGCGGGGAATATTTGACGGTGGTTTTAACAATACAGATCGAGATGCTGATGATGAAGAATATGAGGCTGCTGATGGTGATTGGGGTGAGGAACTTGACATGGTCGATGTTGATGCATTGCAAAATGGAGATGTTGCTGCAATTTTGGATGCAGTAGAAGTGGCTGAAGAGGATGACGAAGAAGGGGGATGGGACCTCGAAGATTTAGAGCTTCCCCCCGAAGCTGACACACCAAAAGTTTCTGTCAGTTCACGATCTTCAGTGTTTGTGGCCCCAACACCTGGGATGGCAGTTAGCCAGATATGGATTCAGAGATCATCTCTTGCAGCTGATCATGTAGCTGCTGGCAATTTTGATACTGCAATGAGATTACTGAACCGGCAACTCGGGATAAGGAACTTTGACCCCTTGAAATCTATGTTCCTAGATCTGCATACAGGCAGCCATTCCTATCTGCGTGCTTTTTCGTCTGCACCAGTTGTAGCAATTGCTGTTGAAAGAGGCTGGAGTGAGTCATCTAGTCCAAATGTGAGAGGCCCACCAGCACTTCCTTTCAAATTGTCTCAATTAGATGAAAAACTCAAAGCTGGTTACAAGTCAACTACTGCTGGGAAATTTACTGATGCTCTTCGCACCTTTATCAATATTCTTCATACCATTCCTTTGATAGTTGTTGAGTCTAGAAGGGAGGTTGATGATGTGAAAGAATTGATTGTTATAGTGAAAGAGTATGTTTTGGGGCTGCGGATGGAGCTAAAAAGAAGGGAAATTAAGGACGATCCAGCACGCCAGCAAGAGCTTGCTGCTTATTTCACCCACTGCAATCTTCAAGTGCCTCACTTGAGGCTAGCTTTGCTGAATGCCATGACTGTCTGCTACAAGGCAAAGAACCTTTCCACGGCAGCTAACTTTGCCAGGAGGTTACTTGAGACCAATCCTACTGTTGAAAACCAAGCTAAGACAGCAAGGCAAGTGCTGGCAGCTGCAGAAAAAAATATGACTGATGTCTTAGAATTGAACTATGATTTTCGGAACCCATTTGTAATTTGTGGGGCAACCTATGTGCCCATTTATCGTGGACAAAAGGATGTCTCTTGCCCCTATTGTACTTCCCGTTTTGTGCCAACCCTGGAGGGGCAGCTATGTGCTGTGTGTGAGCTTTCGGTGGTAGGGGCGGATGCTTCTGGACTGCTCTGCTCTCCTTCCCAGATTCGTTGA 3729 0.4336 MASFVAQIEIDLRDGACDRGKMLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCATFHPKEDIVVSASLDQTVRVWDIGSLKRKAGPPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILATHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYTKDRFLRFYEFSTQRETQILTIRRPGSSSLNQCPKTLSYSPSENAILLCSDVEGGSYELYCISKDGTKDSFGRGDMQDPKKGLGGSAVFVARNRFAVLDKGSNQVSVKNLKNELVKKSALPTAADAIFYAGTGNLLCRSEDRVFIFDLQQRIVLGDLQTPFIKYVVWSNDMENVALLSKHAIVIASKKLVHQCTLHETIRVKSGAWDDNGIFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVIGNTIFCLGRDGKNKAITVDATEYIFKLSLLKKKYDHVMNMIRNSQLCGQAVIAYLQQKGFPEVALHFVKDERIRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNSGIVEYAYQRTKNFERLSFLYLINGNVDKLSKMLKIAEVKNDVMGQFHNALYMGDIKERVKILENVGHLPLAYVTASVHGLHDVAERLAAELGDNIPSFPKGKVQSLLIPPSPVLCGGDWPLLRVMRGIFDGGFNNTDRDADDEEYEAADGDWGEELDMVDVDALQNGDVAAILDAVEVAEEDDEEGGWDLEDLELPPEADTPKVSVSSRSSVFVAPTPGMAVSQIWIQRSSLAADHVAAGNFDTAMRLLNRQLGIRNFDPLKSMFLDLHTGSHSYLRAFSSAPVVAIAVERGWSESSSPNVRGPPALPFKLSQLDEKLKAGYKSTTAGKFTDALRTFINILHTIPLIVVESRREVDDVKELIVIVKEYVLGLRMELKRREIKDDPARQQELAAYFTHCNLQVPHLRLALLNAMTVCYKAKNLSTAANFARRLLETNPTVENQAKTARQVLAAAEKNMTDVLELNYDFRNPFVICGATYVPIYRGQKDVSCPYCTSRFVPTLEGQLCAVCELSVVGADASGLLCSPSQIR 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00468 1242 Pfam WD domain, G-beta repeat 147 184 IPR001680 GO:0005515
Phco9g00468 1242 Pfam WD domain, G-beta repeat 66 100 IPR001680 GO:0005515
Phco9g00468 1242 Pfam WD domain, G-beta repeat 219 252 IPR001680 GO:0005515
Phco9g00468 1242 Pfam WD domain, G-beta repeat 262 297 IPR001680 GO:0005515
Phco9g00468 1242 Pfam WD domain, G-beta repeat 105 142 IPR001680 GO:0005515
Phco9g00468 1242 CDD Coatomer_WDAD_alpha 344 800 IPR047312 -
Phco9g00468 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 185 IPR001680 GO:0005515
Phco9g00468 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 68 109 IPR001680 GO:0005515
Phco9g00468 1242 Pfam Coatomer WD associated region 363 792 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Phco9g00468 1242 PANTHER COATOMER 25 352 - -
Phco9g00468 1242 SUPERFAMILY DPP6 N-terminal domain-like 268 576 - -
Phco9g00468 1242 Gene3D - 664 836 - -
Phco9g00468 1242 MobiDBLite consensus disorder prediction 896 917 - -
Phco9g00468 1242 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 68 100 - -
Phco9g00468 1242 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 185 - -
Phco9g00468 1242 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 297 - -
Phco9g00468 1242 FunFam Coatomer subunit alpha 22 340 - -
Phco9g00468 1242 ProSitePatterns Trp-Asp (WD) repeats signature. 171 185 IPR019775 -
Phco9g00468 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Phco9g00468 1242 PIRSF Alpha-COP 20 1238 IPR016391 GO:0006886|GO:0006888|GO:0030126
Phco9g00468 1242 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 255 - -
Phco9g00468 1242 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 110 142 - -
Phco9g00468 1242 CDD WD40 30 338 - -
Phco9g00468 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 262 IPR001680 GO:0005515
Phco9g00468 1242 SUPERFAMILY WD40 repeat-like 20 336 IPR036322 GO:0005515
Phco9g00468 1242 PRINTS G protein beta WD-40 repeat signature 171 185 IPR020472 -
Phco9g00468 1242 PRINTS G protein beta WD-40 repeat signature 284 298 IPR020472 -
Phco9g00468 1242 PRINTS G protein beta WD-40 repeat signature 129 143 IPR020472 -
Phco9g00468 1242 ProSiteProfiles Trp-Asp (WD) repeats profile. 110 151 IPR001680 GO:0005515
Phco9g00468 1242 SMART WD40_4 214 253 IPR001680 GO:0005515
Phco9g00468 1242 SMART WD40_4 61 100 IPR001680 GO:0005515
Phco9g00468 1242 SMART WD40_4 19 58 IPR001680 GO:0005515
Phco9g00468 1242 SMART WD40_4 145 184 IPR001680 GO:0005515
Phco9g00468 1242 SMART WD40_4 103 142 IPR001680 GO:0005515
Phco9g00468 1242 SMART WD40_4 300 338 IPR001680 GO:0005515
Phco9g00468 1242 SMART WD40_4 258 297 IPR001680 GO:0005515
Phco9g00468 1242 FunFam Coatomer subunit alpha 664 836 - -
Phco9g00468 1242 Gene3D - 21 340 IPR015943 GO:0005515
Phco9g00468 1242 Pfam Coatomer (COPI) alpha subunit C-terminus 839 1242 IPR010714 GO:0005198|GO:0005515|GO:0006886|GO:0016192|GO:0030126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00468 Phco-Chr9 3394161 3404330 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00468 9 3394161 3404330 Phco9g00468 9 3394161 3404330 ECH