Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00459 ATGGGGACTCTGAGATCGATTCTGAAGCATCCAGATGACTTATACCCGTTGCTGAAGCTCAAAATGGCCGCCAGAAACGCCGAGAAGCAGATCCCGCCGGAGCCGCACTGGGCCTTCTGTTACACTATGCTCCACAAGGTTTCTAGAAGCTTCGCACTCGTCATTCAGCAACTCGGTACCGACCTTCGCAACGCGGTTTGCATATTCTATCTGGTTCTTCGAGCGCTCGACACCGTTGAGGATGACACTAGCATAGCTACAGATGTCAAGGTGCCTATACTGATAGCTTTTCATCGTCATATTTATGATCGTGATTGGCACTTTTCATGTGGCACAAAGGAGTATAAAGTTCTAATGGATCAGATTCATCATGTTTCAACTGCTTTTCTGGAACTTGGAAAGAACTATCAGGAAGCAATTGAGGACATTACAAAAAGAATGGGTGCTGGCATGGCCAAATTTATTTGCAAGGAGGTTGAAACAATTGATGACTATGATGAATATTGTCACTACGTGGCTGGACTTGTTGGGCTGGGTTTATCAAAGCTCTTCCATGCCTCTGGTTCAGAAGATCTGGCTTCTGATTCCCTTTCCAATTCAATGGGCTTGTTTCTTCAGAAAACAAACATCATTCGAGATTATCTGGAAGACATCAATGAAATCCCCAAGTCACGCATGTTCTGGCCACGACAGATTTGGAGTAAATATGTTAACAAACTCGAGGATTTGAAATATGAGGAGAACTCTGTTAAGGCAGTACAATGCTTAAATGACATGGTCACTAATGCTCTGATGCATGCTGAAGATTCCTTAATGTACATGTCTGCTTTAAGAGACTTGTCTATATTTCGCTTTTGTGCTATACCCCAGATAATGGCAATTGGAACACTAGCGTTATGTTATAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGAGAGGTTTAACTGCCAAGGTGATTAACCGAACAAAGACTATGGCTGATGTCTATGGCGCTTTCTTTGATTTTGCTTCTGTGTTGGAGTCCAAGGTTGACAAAAATGATCCCAATGCGACAAAAACATTGAGCAGGCTGGTAGCTATACAGAAAAGTTGCAGAGAATCTGGTCTCTTGAGTAAAAGGAAATCATTCATTGTGAAGAATAAAAATGGATATGGCTCATTTATGATTGTCATGCTGGTCATCATGGTTTCCATCATTTTTGCTTATCTGTCTGCTAACCACCATAATAACTAG 1242 0.4187 MGTLRSILKHPDDLYPLLKLKMAARNAEKQIPPEPHWAFCYTMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIATDVKVPILIAFHRHIYDRDWHFSCGTKEYKVLMDQIHHVSTAFLELGKNYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASGSEDLASDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVNKLEDLKYEENSVKAVQCLNDMVTNALMHAEDSLMYMSALRDLSIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVINRTKTMADVYGAFFDFASVLESKVDKNDPNATKTLSRLVAIQKSCRESGLLSKRKSFIVKNKNGYGSFMIVMLVIMVSIIFAYLSANHHNN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00459 413 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Phco9g00459 413 FunFam Squalene synthase 1 34 370 - -
Phco9g00459 413 NCBIfam squalene synthase 36 367 IPR006449 GO:0004310|GO:0008610
Phco9g00459 413 SFLD Isoprenoid Synthase Type I 36 325 - -
Phco9g00459 413 SFLD Squalene/Phytoene Synthase Like 36 325 IPR002060 GO:0009058
Phco9g00459 413 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
Phco9g00459 413 Gene3D Farnesyl Diphosphate Synthase 34 370 IPR008949 -
Phco9g00459 413 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 405 IPR044844 GO:0004311
Phco9g00459 413 SUPERFAMILY Terpenoid synthases 36 365 IPR008949 -
Phco9g00459 413 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Phco9g00459 413 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00459 Phco-Chr9 3288455 3294165 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00459 9 3288455 3294165 Phco9g00459 9 3288455 3294165 ECH