Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00440 ATGCTACAAGTTTGGGCCACAATGTGGGTAAAAGTCCAAGCCTATGATAAAACAAGGCCCACTTGGACTGGGGAATCTCAGGCAATTTCTTCCTGCACCTCCATAAATCTTTCATTTTCAAAATTACTCTTAAGGAAAAAGAGATCGGAACGTGGAACTTCTCTGTGCTGCGGATACCGGAATATCCAACTTCTCAGATCGGATCTATTCGACTTCGTTGCAGTAATTATGGCTTCTTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCGCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTTCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTTATTATCAGTACTGGCATTAATCCCAAGGCCAAATCTTACTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTGGCTGGGCTCTCTGCTGGAATGGCTATTGGCATTGTTGGTGATGCTGGTGTTAGAGCCAACGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTCATCCTCATCTTTGCTGAAGCTCTTGCCCTGTATGGTCTCATTGTTGGTATTATCCTGTCCTCTCGTGCTGGTCAGTCTAGAGCTGATTAA 723 0.4716 MLQVWATMWVKVQAYDKTRPTWTGESQAISSCTSINLSFSKLLLRKKRSERGTSLCCGYRNIQLLRSDLFDFVAVIMASFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00440 240 Pfam ATP synthase subunit C 172 230 IPR002379 GO:0015078|GO:0033177|GO:1902600
Phco9g00440 240 Pfam ATP synthase subunit C 92 151 IPR002379 GO:0015078|GO:0033177|GO:1902600
Phco9g00440 240 PRINTS Vacuolar ATP synthase 16kDa subunit signature 105 129 IPR000245 GO:0033179|GO:0046961|GO:1902600
Phco9g00440 240 PRINTS Vacuolar ATP synthase 16kDa subunit signature 131 155 IPR000245 GO:0033179|GO:0046961|GO:1902600
Phco9g00440 240 PRINTS Vacuolar ATP synthase 16kDa subunit signature 182 208 IPR000245 GO:0033179|GO:0046961|GO:1902600
Phco9g00440 240 PRINTS Vacuolar ATP synthase 16kDa subunit signature 209 232 IPR000245 GO:0033179|GO:0046961|GO:1902600
Phco9g00440 240 CDD ATP-synt_Vo_c_ATP6C_rpt1 88 155 - -
Phco9g00440 240 CDD ATP-synt_Vo_c_ATP6C_rpt2 164 231 - -
Phco9g00440 240 Gene3D - 86 237 IPR035921 -
Phco9g00440 240 SUPERFAMILY F1F0 ATP synthase subunit C 89 152 IPR035921 -
Phco9g00440 240 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 78 236 - -
Phco9g00440 240 FunFam V-type proton ATPase proteolipid subunit 86 237 - -
Phco9g00440 240 NCBIfam V-type ATPase subunit C 88 196 IPR011555 GO:0033179|GO:0046961|GO:1902600
Phco9g00440 240 SUPERFAMILY F1F0 ATP synthase subunit C 162 231 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00440 Phco-Chr9 3170187 3172043 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00440 9 3170187 3172043 Phco9g00440 9 3170187 3172043 ECH