Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00309 ATGGGAGAAGAAGTGATTTGGAAAGGTGTTACAAAGAAAGGGGTCAACCCGGGGAAGGCTACCATATTAGCTCTTGGCAAGGCTTTCCCTCCACAGCTTGTCATGCAAGAGTATTTAGTTGATGGATATTTCAGGAGCACAAACTGTGACAATCCTGAGCTTAAGCAGAAGCTCACTAGACTTTGCAAAACAACCACAGTGAAAACAAGGTACGTGGTTATGTCAGAGGAAATACTAATAAAGTATCCAGAACTTGTGACTGAAGGCACCCCCACAGTGAAGCAGCGGCAAGAGATATGTAACGAGGCAGTGACAGAAATGGCCACTGAGGCTGCACTAGGTTGCATTAAGAGCTGCGGTGGATCATTATCAGACATAACACACTTGGTTTATGTGTCATCCAGTGAAGCAAGACTACCTGGTGGTGATCTTTACCTAGCGAAAGGACTAGGACTGAGCCCTGATACTCAACGAATCATGCTCTATTTCGCTGGTTGTTCAGGAGGTGTGGCTGGCCTACGTGTTGCAAAAGACATAGCTGAGAACAACCCTGGAAGTCGGGTGTTGCTTGCTACCTCAGAAACTACAATTATTGGGTTCAAGCCACCAAGTGCAGATAGACCCTATGATCTTGTCGGGGTGGCACTCTTTGGGGATGGTGCTGGTGCCATGATAATTGGCTCAGATCCAATATTGGAGTATGAGAAGCCTCTCTTTGAGCTTCACACTGCAGTTCAGGAGTTTTTGCCACACACTGAGAAGAAAATTGATGGGAGGCTGACAGAAGAGGGGATAAGCTTCAAGCTAGCAAGGGAACTTCCTCAGATAATTGAAGACAATGTCGAAGGATTCTGTGACAAATTAATGAGTGTTGTTGGGTTCCAGAATAAGGAGTACAACAAGCTGTTTTGGGCTGTACATCCAGGGGGGCCTGCCATCTTGAATCGCATTGAGAAGAGACTTGATTTGTTACCCGATAAGCTAAGTGCAAGTAGAAAAGCTCTCATGGATTATGGCAATGCTAGCAGTAATACCATTGTTTATGTGCTGGAGTATATGATAGAGGAGGCTCTCAAGACAAGAAAAGATGGTAGAGGAGATCCTGAATGGGGCTTGATACTTGCATTTGGACCCGGAATTACATTTGAGGGAATTCTTGCCAGGAACTTGTGTGCTTGA 1179 0.4538 MGEEVIWKGVTKKGVNPGKATILALGKAFPPQLVMQEYLVDGYFRSTNCDNPELKQKLTRLCKTTTVKTRYVVMSEEILIKYPELVTEGTPTVKQRQEICNEAVTEMATEAALGCIKSCGGSLSDITHLVYVSSSEARLPGGDLYLAKGLGLSPDTQRIMLYFAGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSDPILEYEKPLFELHTAVQEFLPHTEKKIDGRLTEEGISFKLARELPQIIEDNVEGFCDKLMSVVGFQNKEYNKLFWAVHPGGPAILNRIEKRLDLLPDKLSASRKALMDYGNASSNTIVYVLEYMIEEALKTRKDGRGDPEWGLILAFGPGITFEGILARNLCA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00309 392 CDD CHS_like 20 386 - -
Phco9g00309 392 FunFam Chalcone synthase 2 4 237 - -
Phco9g00309 392 Pfam Chalcone and stilbene synthases, C-terminal domain 240 390 IPR012328 -
Phco9g00309 392 PIRSF PKS_III 8 391 IPR011141 GO:0009058|GO:0016747
Phco9g00309 392 Gene3D - 238 389 IPR016039 GO:0016746
Phco9g00309 392 Pfam Chalcone and stilbene synthases, N-terminal domain 11 230 IPR001099 -
Phco9g00309 392 SUPERFAMILY Thiolase-like 17 230 IPR016039 GO:0016746
Phco9g00309 392 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 13 390 IPR011141 GO:0009058|GO:0016747
Phco9g00309 392 Gene3D - 3 237 IPR016039 GO:0016746
Phco9g00309 392 SUPERFAMILY Thiolase-like 237 388 IPR016039 GO:0016746
Phco9g00309 392 FunFam Chalcone synthase 1 238 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00309 Phco-Chr9 2102522 2104095 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00309 9 2102522 2104095 Phco9g00309 9 2102522 2104095 ECH