Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00305 ATGGAGACAGGTTGTGGGAGGCTGAGCAGGAAGAAAAGTGGTGGAAACGGACAGGTTCTAGACGGTTCCAATATTATGGAGTTGGTTGGAAACGACCAAGTTTTCACCACCTTCGTCGACAATAAGTTCCACGAGTTAGACACAGACAAAGATGGCAAACTCTCTGTGAAAGAGCTCCAACCTGCTGTTGCTGACATAGGTGCTGCTCTCGGCCTCCCTGCTCACGGCACCAATCCTGAATCCGATCACATCTATTCCGAGGTGTTGAACGAATTCACACATGGGAAGCAGCAAAAAGTGAGCAAAACTGAGTTCAAAGAGGTTCTCTCTGATATTCTCTTGGGTATGGCTGCTGGGTTGAAGCGTGACCCAATTGTGATACTTCGCATTGATGGGGAAGATCTTCTGGAATTTATTAATGGTTCAGGTTATGAAGCAGAAATGGCATCCATATTCTCTCAGATTGAATCCCCGAACAGATCACTGCATGGCCATATAATTGAAGCTCTTGGCAAGCTCACTGTGGAACAAGGAATTCCTCCTACATCAGATGCTTGGGTTTTAAGCAACATTGTGGAACCTGCACTGCTATATCAAGATAGGTCTGGTTTGGATAAGCCTGTTTCTCAGGAAACATTTTTGGAGGAATTTAAGGTAGTGGCATTGGGTGTGGCTAACCGTCTTAAGGAGCAACCAGTCATAGTTGCTCACAGTGAGAACATCTTTGATGGAAGTGGTGTTAAGAGACTATTATCCAACAAGTTTGAATTGGACAAGATTTTGAACTCAGCTTTAGAGACTTTGCCTAAAGATCGCAATGGAAAGATGTCAAAAGAGTATCTACGGGTTGCACTGGACACGGTGGCTCCATCTGCTGGTTTACCTCCCCTTGGTGCAATTGAAGAGATGGATAAGGTCATTGGTGAAGTGTTTAAGATGGTGAATGCAGATGAAGCGAAGATGGTGAAAGAAGAGGAGTTCAAGAAAGTTTTAACTGAAATACTGGGGAGCATAATGTTGCAGTTAGAGGGAAGCCCCATATCAGTTTCTTCAAATTCGGTAGTGCACGAGCCTCTAGACTCATCTTCTACACTTCTTCAGCCATCCTCTAGTGAAACTGCACCCTAG 1128 0.4459 METGCGRLSRKKSGGNGQVLDGSNIMELVGNDQVFTTFVDNKFHELDTDKDGKLSVKELQPAVADIGAALGLPAHGTNPESDHIYSEVLNEFTHGKQQKVSKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFINGSGYEAEMASIFSQIESPNRSLHGHIIEALGKLTVEQGIPPTSDAWVLSNIVEPALLYQDRSGLDKPVSQETFLEEFKVVALGVANRLKEQPVIVAHSENIFDGSGVKRLLSNKFELDKILNSALETLPKDRNGKMSKEYLRVALDTVAPSAGLPPLGAIEEMDKVIGEVFKMVNADEAKMVKEEEFKKVLTEILGSIMLQLEGSPISVSSNSVVHEPLDSSSTLLQPSSSETAP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00305 375 ProSitePatterns EF-hand calcium-binding domain. 47 59 IPR018247 -
Phco9g00305 375 MobiDBLite consensus disorder prediction 350 375 - -
Phco9g00305 375 SUPERFAMILY EF-hand 42 343 IPR011992 -
Phco9g00305 375 Gene3D - 39 337 - -
Phco9g00305 375 SMART efh_1 306 334 IPR002048 GO:0005509
Phco9g00305 375 SMART efh_1 38 66 IPR002048 GO:0005509
Phco9g00305 375 SMART efh_1 260 288 IPR002048 GO:0005509
Phco9g00305 375 ProSiteProfiles EF-hand calcium-binding domain profile. 34 69 IPR002048 GO:0005509
Phco9g00305 375 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 130 354 - -
Phco9g00305 375 Pfam EF-hand domain pair 42 108 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00305 Phco-Chr9 2091474 2094915 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00305 9 2091474 2094915 Phco9g00305 9 2091474 2094915 ECH