Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00302 ATGGTATCTGTACGCGGAAACAATTATAGTGGCTTTGTCGTTTCTGGGACATTCTATTGGAAGCCAGGAAATGGATGTGGTTCCTTATCCAGTAAGTCCCCAAACAAGCCCCTTTTCACTCCGTCACTGCCACTGCCACTGCCACTGCCACATGTTCAACTTCAACCCTCCCAAACACACCACAACACCACAAACCATAGCAAAACCATTACCAGATTATTAATGGAAGCTATTTTCGTCACCAAACCAGCTTCTCACTCTCACTTCAAAACTAGATTCTCTTCAAACCCCAAACACTTCTTTAAACAACAATCCTTTCTCCCCATCCGAAACAACCCCACGCGCTTCCGCCTCGTCACCGCCACACTCCAAAACCAACAACAAGAAGCAGCAGCTTCCAAAGACACCGAAGACGAGGCCTATGGTGAAGTCAAAGGCATCATCGGCAGCAGAGCCCTCGACACCGCCGCCGGAATGGAGTACCTCATCGAGTGGAAAGACGGCCACGCGCCATCATGGGTTCCGGCAGACTTCATCGCCAAAGACGTCGTCGCCGAGTACGAGACCCCGTGGTGGACCGCTGCGAAGAAGGCCGACGAGTCCGCGCTTAGGAACCTCGTCGAATCCGGCGACGGCCGCGATGTCGACGCTGTGGACGCCGACGGCCGTACCGCGCTCCTCTTCGTAGCGGGACTCGGCTCGGAACCGTGCGTGAAGCTGCTTGCGGAAGCCGGCGCGAATCTGGACCACCGCGACCGCAGCGGGGGTCTCGCGGCGCTGCACATGGCGGCGGGGTACGTGAGGCCCGGCGTGGCGAAGTTGCTGCTGGATTTCGGCGCGGATCCCGAGGTGGCGGATGACCGTGGAAGAACGGCGTTAGATCTGGCGCGGGAGATTCTGAAGGCGACGCCGAAGGGGAATCCGATGCAGTTCGGGCGCAGGATTGGACTCGAGGGTGTGGTTAGGGTTTTAGAAGGGGCTGTGTTCGAGTTCGTGGAGGTGCAGGAGATTCTTGAACGGAGAGGTAAGGGAGAAAATTTGGAGTACCTTGTGCGGTGGAAGGACGGTGAGGCCAATGAGTGGGTGAAGGCGAAGTTTGTGGCGGAGGATTTGGTTAGAGACTACGAGGCTGGCCTTGAATACGCAGTGGCCGAGGCGGTGCTCGCGAAAAGGATCGCGGACGAAGGGACGCCGGAGGTTTTAGTTAAATGGGCGGATTTGGATGAGCCCACTTGGGAGCCCCAGGAGAATGTGGACCCTGACCTTGTCAAGGCGTTCGAGGAAACTAACAACCAGGCCCAGCCCAATAGTAATGGGCCTGCTGTCGTCGTTTCCAATCAAGATAGCCCGTAA 1353 0.5669 MVSVRGNNYSGFVVSGTFYWKPGNGCGSLSSKSPNKPLFTPSLPLPLPLPHVQLQPSQTHHNTTNHSKTITRLLMEAIFVTKPASHSHFKTRFSSNPKHFFKQQSFLPIRNNPTRFRLVTATLQNQQQEAAASKDTEDEAYGEVKGIIGSRALDTAAGMEYLIEWKDGHAPSWVPADFIAKDVVAEYETPWWTAAKKADESALRNLVESGDGRDVDAVDADGRTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKLLLDFGADPEVADDRGRTALDLAREILKATPKGNPMQFGRRIGLEGVVRVLEGAVFEFVEVQEILERRGKGENLEYLVRWKDGEANEWVKAKFVAEDLVRDYEAGLEYAVAEAVLAKRIADEGTPEVLVKWADLDEPTWEPQENVDPDLVKAFEETNNQAQPNSNGPAVVVSNQDSP 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00302 450 Pfam Chromo (CHRromatin Organisation MOdifier) domain 384 428 IPR023780 -
Phco9g00302 450 MobiDBLite consensus disorder prediction 425 450 - -
Phco9g00302 450 MobiDBLite consensus disorder prediction 427 450 - -
Phco9g00302 450 SMART ANK_2a 255 284 IPR002110 GO:0005515
Phco9g00302 450 SMART ANK_2a 221 250 IPR002110 GO:0005515
Phco9g00302 450 SMART ANK_2a 186 217 IPR002110 GO:0005515
Phco9g00302 450 ProSiteProfiles Ankyrin repeat region circular profile. 221 253 - -
Phco9g00302 450 SUPERFAMILY Chromo domain-like 380 432 IPR016197 -
Phco9g00302 450 Gene3D - 186 327 IPR036770 -
Phco9g00302 450 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515
Phco9g00302 450 ProSiteProfiles Ankyrin repeat region circular profile. 255 287 - -
Phco9g00302 450 ProSiteProfiles Ankyrin repeat profile. 255 287 IPR002110 GO:0005515
Phco9g00302 450 Gene3D - 378 430 - -
Phco9g00302 450 SMART chromo_7 140 192 IPR000953 -
Phco9g00302 450 SMART chromo_7 330 380 IPR000953 -
Phco9g00302 450 SMART chromo_7 381 431 IPR000953 -
Phco9g00302 450 SUPERFAMILY Ankyrin repeat 176 298 IPR036770 -
Phco9g00302 450 Pfam Ankyrin repeats (many copies) 241 296 IPR002110 GO:0005515
Phco9g00302 450 ProSiteProfiles Chromo and chromo shadow domain profile. 382 438 IPR000953 -
Phco9g00302 450 CDD CD3_cpSRP43_like 379 427 IPR030300 -
Phco9g00302 450 PANTHER MYOTROPHIN 123 302 - -
Phco9g00302 450 Gene3D - 328 377 - -
Phco9g00302 450 Gene3D - 139 185 - -
Phco9g00302 450 SUPERFAMILY Chromo domain-like 330 377 IPR016197 -
Phco9g00302 450 SUPERFAMILY Chromo domain-like 138 191 IPR016197 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00302 9 2074610 2077941 Phco9g00302 9 2074610 2077941 ECH