Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00297 ATGGCTTTCTTTCTTCTCTTTTTCCTCTCCCTTCTTGCTTCTTCTGCCACTGCTTGCGATCGCTGCCTGCACCAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCAACTGGGGCATGTGGGTATGGGTCTCTGGCACTAGACATAAGTGGTGGACACCTTGCAGGTGGTGTGGCCTCTCTCTTCAAAAATGGAGCCGGTTGTGGTGCTTGCTTTGAGATAAGATGCAAGAACCCGAGTGTTTGCAACAAAAAGGGTACTAGAGTGGTATTGACTGATGATCTTAGTCACAACAATGAAACTGACTTTGTGCTGAGCAGCAGAGCTTTCTCAGCCATGGCTCAGAAGGGAAAGGGCCAACAAATATTGAAACTTGGCATTGTTGACATTGAATACAAGAGAGTACCTTGCAATTACCAAAATCAGAATTTGGCGGTCCGTGTAGAAGAATCAAGCAAGAATCCTGATTATTTAGCCATTAAATTTTTGTACCAAGGAGGTCAAACAGAGATAGTAGCCGTTGATGTGGCTCAGGTTGGGTCTTCAAATTGGAGCTTCATGAGCAGAAACAACGGGGCAGTGTGGGACACAAACAGGGTACCCACTGGTGCATTGCAGTTTCGGTTAGTGGTAACAGCAGGCTATGATGGGAAGTGGATTTGGGCAAAGAATGTCCTACCTTCTGATTGGAAAAATGGTGTCATATATGATTCTGGCCTTCAGATAACAGACATTGCACAAGAGGGTTGTTCCCCTTGTGATGATTCCATCTGGTCATGA 786 0.4542 MAFFLLFFLSLLASSATACDRCLHQSKASYFSKASALSTGACGYGSLALDISGGHLAGGVASLFKNGAGCGACFEIRCKNPSVCNKKGTRVVLTDDLSHNNETDFVLSSRAFSAMAQKGKGQQILKLGIVDIEYKRVPCNYQNQNLAVRVEESSKNPDYLAIKFLYQGGQTEIVAVDVAQVGSSNWSFMSRNNGAVWDTNRVPTGALQFRLVVTAGYDGKWIWAKNVLPSDWKNGVIYDSGLQITDIAQEGCSPCDDSIWS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00297 261 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Phco9g00297 261 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Phco9g00297 261 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Phco9g00297 261 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Phco9g00297 261 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Phco9g00297 261 CDD DPBB_EXLA_N 17 141 - -
Phco9g00297 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Phco9g00297 261 PRINTS Major pollen allergen Lol pI signature 58 69 IPR005795 GO:0005576|GO:0019953
Phco9g00297 261 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576|GO:0019953
Phco9g00297 261 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576|GO:0019953
Phco9g00297 261 PRINTS Major pollen allergen Lol pI signature 78 88 IPR005795 GO:0005576|GO:0019953
Phco9g00297 261 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Phco9g00297 261 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576|GO:0019953
Phco9g00297 261 FunFam Expansin-like A2 141 245 - -
Phco9g00297 261 Pfam Lytic transglycolase 58 134 IPR009009 -
Phco9g00297 261 SMART dpbb_1 57 134 IPR007112 -
Phco9g00297 261 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Phco9g00297 261 SUPERFAMILY PHL pollen allergen 145 240 IPR036749 -
Phco9g00297 261 Gene3D - 10 140 IPR036908 -
Phco9g00297 261 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Phco9g00297 261 PANTHER EXPANSIN-B3 11 243 - -
Phco9g00297 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 144 IPR007112 -
Phco9g00297 261 Gene3D - 141 245 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00297 Phco-Chr9 2041340 2042742 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00297 9 2041340 2042742 Phco9g00297 9 2041340 2042742 ECH