Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00240 ATGTCAGAAACAATTACTTTGGAGGAAGCTGAACCTGAAACACCCCAAACTACCCACATTTTCAGATCAAAATTACCAGACATACCCCTCCCCGACAACCTCCTCCTCCACACATACTGCTTCCTTAAACTTCCCCAAGTTGCCCACCGCACATGTCTCATCGCCGCCGCCAGAACCTACACCTACGCCGACACTCACAGCGCCTCGCGGAAGGTGGCCGCTGGCATGTCGAAGCTGGGCATCCAGAAGGGCGACGCCGTCATGATTCTCCTCCCTAACTCCCCGGAGTTCGTGTTCTCCTTCATGGCAGCCTCCATGCTTGGCGCCGTGGCCACAACTGCCAACCCCTCCTACACCGCCGCCGAAATCGCCAAGCAACTCTCCGCCTCCAACGCCAAGCTGGTCGTCACCCTCTCCGAGAACGTCCACAAGCTCAACCAGCAAGAGCACCACCACTTCTTCAAGGTGGTCACCGTCGACGACCCGCCGGAGAATTGCACGAGGTTCCCGGAGGGCGACGAGAGCGGGGTTCCGGAGGTTGAGATATCAGCGGAGGACGCGGTGGCGCTTCCGTTTTCGTCGGGAACGACGGGGCTAGCGAAGGGGGTGATTCTGACGCACAAGTGTTTGGTAACGAGCGTGGCGCAACAGATGGAGGGAGAGAACCCGAACATGTACCTGAAAGAAGAGGACGTTGTGCTGTGCGTGCTTCCTCTTTTTCACATATTCTCCATGCACATCGTCATGATGTGCGGGCTGAGAGCTGGCAGTACCATTTTGTTGATCGAGAAGTTTGAGATGAGAGCGCTGCTGGAGGCGATCGAGCGGCACAGGGTGACGGTGGCGATAGTGGTGCCGCCGCTGGTGGCGGCACTTACGAAGAACAGTGCGGTGGAGGAGTACGATTTGAGGTCGATACGATTGGTGATGTCGGGGGCTGCGCCGCTGGGGCAACAGGCGGAAGAGGCTCTGCGGAAAAGGTTGCCTAACGCCATTCTGGGACAGGGCTATGGAATGACAGAGGGTGGACCAGTTTTGACCATGCCTTTGGGCTTTGCAAAGTATCCATTCCCAACCAAATCTGGTTCATGCGGAACTGTGATCAGAAATGCTGAACTGAAGATCATTGACCCTCAAACTTCCTTTTCTCTTCCCCGTAACCACCCTGGCGAGATTTGCATCCGTGGCCCACAGATCATGAAAGGGTACCTGAATGACGAGAAGGCCACTGCAGCCACCATTGATGCAGATGGTTGGCTTCACACAGGTGATATTGGGTACGTGGATGATGATGATGAGGTTTTCCTCGTTGACAGGGCCAAGGAACTCATCAAATTCAAAGCCTTTCAGGTGCCGCCGGCAGAACTTGAAGACCTTCTCATGGGCCACCCTTCCATTGCAGATGCAGCTGTCGTCCCGCAGAATGACGATGCCGCCGGTGAAGTTCCAGTCGCTTTCGTCGTCAGCTTTGATCTTACAGAAGATGCTGTAAAGAATTTTATAGCTAAACAGGTAGTGTTTTACAAGAGACTACACAAAGTGTATTTTGTTGATGAGATTCCAAAGTCTTCCACCGGAAAGATTTTAAGAAAAGAACTGAGAGCAAAGCTGGCGAGCATTATTCAGAGGACCTAG 1635 0.5388 MSETITLEEAEPETPQTTHIFRSKLPDIPLPDNLLLHTYCFLKLPQVAHRTCLIAAARTYTYADTHSASRKVAAGMSKLGIQKGDAVMILLPNSPEFVFSFMAASMLGAVATTANPSYTAAEIAKQLSASNAKLVVTLSENVHKLNQQEHHHFFKVVTVDDPPENCTRFPEGDESGVPEVEISAEDAVALPFSSGTTGLAKGVILTHKCLVTSVAQQMEGENPNMYLKEEDVVLCVLPLFHIFSMHIVMMCGLRAGSTILLIEKFEMRALLEAIERHRVTVAIVVPPLVAALTKNSAVEEYDLRSIRLVMSGAAPLGQQAEEALRKRLPNAILGQGYGMTEGGPVLTMPLGFAKYPFPTKSGSCGTVIRNAELKIIDPQTSFSLPRNHPGEICIRGPQIMKGYLNDEKATAATIDADGWLHTGDIGYVDDDDEVFLVDRAKELIKFKAFQVPPAELEDLLMGHPSIADAAVVPQNDDAAGEVPVAFVVSFDLTEDAVKNFIAKQVVFYKRLHKVYFVDEIPKSSTGKILRKELRAKLASIIQRT 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00240 544 Gene3D - 440 540 IPR045851 -
Phco9g00240 544 Pfam AMP-binding enzyme 49 446 IPR000873 -
Phco9g00240 544 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Phco9g00240 544 Pfam AMP-binding enzyme C-terminal domain 455 527 IPR025110 -
Phco9g00240 544 CDD 4CL 30 533 - -
Phco9g00240 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 535 - -
Phco9g00240 544 Gene3D - 12 439 IPR042099 -
Phco9g00240 544 FunFam 4-coumarate--CoA ligase 2 442 540 - -
Phco9g00240 544 FunFam Long-chain-fatty-acid--CoA ligase FadD 22 441 - -
Phco9g00240 544 SUPERFAMILY Acetyl-CoA synthetase-like 23 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00240 Phco-Chr9 1569369 1571300 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00240 9 1569369 1571300 Phco9g00240 9 1569369 1571300 ECH