Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00187 ATGATCTCAGATAAGGGGCCACATCGGTCTGCAGTTATAGACATGCCTCTGCCACCTACAATCACAATGGCTCCATCTTCTGTCATTGTCACTTCCCGTTTTCATGAATCCATCACCCGTCATGCACTTCGCTCCTATCTCTCTGAGTTTATCTCCACTTTCTTCTACGTCTTTCTTGTCGTTGGCTCTGGAATGTCCTCACGGAAGTTGATGCCTGATGCTTCACTGAACCCAACAAGTCTGGTTGTGGTTGCCATTGCAAGTGCTTTTGCCTTGTCTTGTGTTCTGTATATTGCATGGGACATCTCAGGAGGACACGTGAATCCAGCAGTGACCTTTGCAATGGCAGTGGGAGGTCACGTTAGTGTACCAACTGCTATCTTTTACTGGGTCGCTCAACTTATAGCCTCTGTTATGGCTTGCCTTGTTCTAAGGGTCATTGTTGTTGGCATGCATGTTCCTACCTACACCATTGCAGAAGAGATGACAGGGTTTGGAGCATCAGTGTTAGAGGGTATTCTGACATTTGTTTTGGTGTACACAGTGTATGCAGCCAGGGACCCTAGGCGTGGTCCAATGAGTCCTAATGGCATACTTTTAGTTGGCTTCGTGGCTGGGGCAGGTGTCTTGGCCGCAGGTCCATTCTCTGGTGGGTCAATGAACCCTGCATGTGCTTTTGGCTCGGCAACCATTGCAGGCTCTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATTGGTGCCACCATAGCTGGTCTTCTTTATGACAATGTGCTGTTCCGTTCTTTTCCTACAGAGCTTTCAGAAGGAATTGGGGTGTGA 825 0.4836 MISDKGPHRSAVIDMPLPPTITMAPSSVIVTSRFHESITRHALRSYLSEFISTFFYVFLVVGSGMSSRKLMPDASLNPTSLVVVAIASAFALSCVLYIAWDISGGHVNPAVTFAMAVGGHVSVPTAIFYWVAQLIASVMACLVLRVIVVGMHVPTYTIAEEMTGFGASVLEGILTFVLVYTVYAARDPRRGPMSPNGILLVGFVAGAGVLAAGPFSGGSMNPACAFGSATIAGSFRNQAVYWVGPLIGATIAGLLYDNVLFRSFPTELSEGIGV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00187 274 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco9g00187 274 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco9g00187 274 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco9g00187 274 PRINTS Major intrinsic protein family signature 239 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco9g00187 274 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco9g00187 274 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco9g00187 274 Pfam Major intrinsic protein 40 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco9g00187 274 Gene3D Glycerol uptake facilitator protein. 27 266 IPR023271 -
Phco9g00187 274 PANTHER AQUAPORIN-8 33 261 IPR034294 -
Phco9g00187 274 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Phco9g00187 274 FunFam Probable aquaporin TIP5-1 28 268 - -
Phco9g00187 274 SUPERFAMILY Aquaporin-like 34 267 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00187 Phco-Chr9 1223693 1225800 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00187 9 1223693 1225800 Phco9g00187 9 1223693 1225800 ECH