Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00175 ATGAGATACTCACCTCGTAGCCTCGTTGTAGAACACAACATTCTATTCCTCAGAGGCTTCACGATATTGTTCCTTAGTTGTATAGCTATTCGGCTTAATCTGTGTCTTTCCAGCATCCCCTCTTCACTGAAATCCCTTCCCCTTGGAGGGCATTTAAGTTTTGATGAACTTAGCCTTAGGAGTGCAGCCAAAGACTTTGGAAACAGGTATCAGTATCATCCTATGGCAGTACTACATCCAGAATCAGTTTCTGATATTGCAGCCACCATAAAGCATATCTGGCTGAGGGGTCCAAGCTCACACCTCACGGTTGCAGCAAGGGGCCACGGCCACTCCCTCCAAGGCCAAGCTCAAGCTCATGGAGGAGTTGTGATCAACATGGAATCACTCAAGGTCCCAGAAATGCAGGTACATGTAGGCAGTTCTCCTCCATACGTGGATGTCTCAGGTGGCGAGTTGTGGATAAACATCTTGCATGAGACTCTAAGATACGGGTTGGCGCCAAGATCGTGGACAGACTACCTGCATCTGACAGTTGGTGGCACTCTCTCCAACGCTGGTGTCAGTGGCCAGGCATTTAAGTATGGTCCCCAGATAAGTAATGTTCAGCAGCTGGAGATTGTTACAGGAACAGGGGAGTTGGTGAACTGTTCCAAGGAGCATAATGGGGAACTCTTTCACAGCGTTCTTGGGGGACTTGGCCAGTTTGGCATTATAACCCGAGCAAGAATTATCCTGGAACCAGCACCTACCATGGTGAAATGGATTAGAGTGTTGTACTCAGACTTCACAGCATTCACAACAGACCAAGAGCGGTTAATATCTTCAGAACAAACGTTTGACTACATTGAAGGATTTGTGATAATAAACAGAACTGGTCTGCTAAATAACTGGAGATCATCCTTCAACCCACAATATCCGGTTCAAGCTAGTCATTTCAAGTCAGATGGAAGAACCCTCTTCTGCCTTGAAATGGCTAAATACTTTAACGTGGAAGAAATTGATGCAGCAAACCAGGAAGTTGAGGAACATTTGTCCCGTTTAAGCTACATCCCATCAACCCTTTTTTCAACAGAAGTTACATATGTAGATTTCTTAGACAGGGTGCATGTATCTGAGGTCAAATTGCGTTCAAAAGGGTTGTGGGATATTCCACATCCGTGGCTAAATCTTCTGATACCCAAAAGCCAAATACACAACTTCGCAGAAGTCGTCTTCGGGAATATCCTAACAGAAACTAGCAACGGCCCCGTCCTTATCTACCCAGTGAACAAATCAAAGTGGGACAACAGAACTTCTGTTGTGATTCCTGAGGAAGATATTTTCTACTTAGTGGCATTTCTAACATCTGCAGTTCCCTCTTCCAATGGAACTGATGGCCTAGAATACATACTAAGTCAGAACAAAAGAATTTTAGAATTCTGCCAAAGATCACAACTTGGAGTGAAGCAGTATTTGCCCCACTACACTACACAGCAAGAATGGAGGGCCCATTTTGGTCCTCACTGGGAGACTTTTCTGCAGAGAAAGTCTGTTTATGATCCATTAGCAATACTAGCTCCAGGCCAACGCATATTTCAAAAAGCAATAACCTTCTCATGA 1602 0.4457 MRYSPRSLVVEHNILFLRGFTILFLSCIAIRLNLCLSSIPSSLKSLPLGGHLSFDELSLRSAAKDFGNRYQYHPMAVLHPESVSDIAATIKHIWLRGPSSHLTVAARGHGHSLQGQAQAHGGVVINMESLKVPEMQVHVGSSPPYVDVSGGELWINILHETLRYGLAPRSWTDYLHLTVGGTLSNAGVSGQAFKYGPQISNVQQLEIVTGTGELVNCSKEHNGELFHSVLGGLGQFGIITRARIILEPAPTMVKWIRVLYSDFTAFTTDQERLISSEQTFDYIEGFVIINRTGLLNNWRSSFNPQYPVQASHFKSDGRTLFCLEMAKYFNVEEIDAANQEVEEHLSRLSYIPSTLFSTEVTYVDFLDRVHVSEVKLRSKGLWDIPHPWLNLLIPKSQIHNFAEVVFGNILTETSNGPVLIYPVNKSKWDNRTSVVIPEEDIFYLVAFLTSAVPSSNGTDGLEYILSQNKRILEFCQRSQLGVKQYLPHYTTQQEWRAHFGPHWETFLQRKSVYDPLAILAPGQRIFQKAITFS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00175 533 Gene3D - 127 251 IPR016169 -
Phco9g00175 533 Gene3D - 252 485 IPR016170 -
Phco9g00175 533 FunFam Cytokinin dehydrogenase 2 252 485 - -
Phco9g00175 533 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 250 526 IPR015345 GO:0009690|GO:0019139|GO:0050660
Phco9g00175 533 SUPERFAMILY FAD-linked oxidases, C-terminal domain 250 526 IPR016164 GO:0003824|GO:0050660
Phco9g00175 533 Gene3D - 60 526 IPR016167 -
Phco9g00175 533 ProSiteProfiles PCMH-type FAD-binding domain profile. 70 249 IPR016166 GO:0071949
Phco9g00175 533 Pfam FAD binding domain 74 218 IPR006094 GO:0050660
Phco9g00175 533 PANTHER GULONOLACTONE OXIDASE 20 527 - -
Phco9g00175 533 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 74 109 IPR006093 GO:0016491
Phco9g00175 533 SUPERFAMILY FAD-binding/transporter-associated domain-like 48 248 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00175 Phco-Chr9 1147919 1150027 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00175 9 1147919 1150027 Phco9g00175 9 1147919 1150027 ECH