Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00172 ATGGAGAAGTACCTGAGAGAAAACTTCAGCGTCCAGCCGAAGAACCCTTCCGAGTCCGCCCTCCGCCGATGGAGATCCGCTGTCGCCGTCGTAAAAAATCCCCGCCGCCGCTTCCGCATGGTCGCCAATCTCGCCCAACGCGCTGAAGCCGAACACAAGCGTAGGAAGCTCCAGGAAAAAATAAGGGTGGCTCTCTATGTGCAAAAAGCAGCGTTGCATTTTATTAACGCTGGGAATCGTGGTACTGGTGACGGCGGAGGAAAAAGTGGTGGCGGAGGTGACGGTGTTGGCGGAAGCGACAGTGGTGGTAGTCCTGGTTACATGCTCTCAAAAGAGACTCAGGAAGCAGGCTTCGAAATTGAGCCCGACGAATTAGCCTCCATTGTTCGATCCCATGACAAGAAATGTTTAGAACGCTATGAAGGATTGGAAGGAGTAGCAAGGGCAGTTCGTGTGTCCTTGCAAGAGGGCGTTATTTCAGTCGATGTTGAGCATAGACAAAATATCTATGGTTTTAACCGCCACGCCGAGAAGCCCCCTAGAAGCTTTTGGATGTTCGTTTGGGATGCCATGCAGGACTTAACTCTAATCATCCTTATGGCATGTTCTTTGGTTTCTGTAGGTGTTGGAATTTTAACTGAAGGTTGGCCAAAAGGTATGTACGATGGAGTGGGAATCATACTATCTATCCTTTTAGTGGTCTTTGTCACTTCAATCAGTGACTATAAACAGTCTTTGCAATTTAAGGACTTGGATAAAGAAAAGAAAAATGTCAGCATTCAAGTTACAAGAGACGGTAGAAGGCAAAAAGTTTTAATTCATGATCTAGTGATAGGAGACATAGTCCATCTTTCAATAGGAGACATAGTTCCTGCAGATGGGTTATTGATATCTGGTTTCGGCTTATTAATAGACGAATCAACTCTATCAGGTGAGAGCGACGCTGTAAATATTGATGATCGGAGGCCTTTTCTTCTATCTGGGACCACAGTGCAAGATGGGTCTGCTAAGATGTTGGTCACGTCCGTTGGTGTGAGGACGGAATGGGGAAGATTGATGGATACTCTGAACGAAGGAGGAGATGATGAGACACCACTTCAGGTCAAACTAAATGGAGTTGCGACCATTATTGGGAAGATAGGCTTGGGTTTTGCCCTGGTCACATTCATGGTTCTGACGAGCAGGTTTTTGTGGGGGAAAATAGCTCACAATGAGATCACAAAATGGTCCCTAAATGATGCATCCAACCTTCTCAATTTCTTTGCCACGGCTGTGATTATAATAGTTGTGGCAGTTCCCGAGGGGCTTCCTTTGGCAGTCACACTAAGCCTTGCATTTGCAATGAAGAAATTGATGAATGACAAGGCACTAGTCAGGCATCTCTCCGCATGCGAGACCATGGGTTCAGCAGGCTGCATTTGCACTGATAAAACGGGGACTTTGACTACAAATCACATGGTTGTAGACAAAATATGGATTTGCGGACAAACTAAGGCCATTAAAAGCGGCAACAGTGAAAATGTGTTGAAGCCCTTAATTTCTGAACAAACATTTGATCTTCTTTTGCAATCCATATTCCAGAATACTGGCTCAGAGATAGTCAAAGGGCTAGATGGAAAGAACAAGATCATGGGTACTCCCACAGAATCCGCACTGTTGGAATTTGGCTTGCTTTTGGGAGGTGATTCCAAGTTTTATAACGACAAGTATAAAATAGTGAAGGTTGAACCTTTCAATTCAGTCAGAAAAAAGATGTCCGTGATGGTGGCTCTTCCCGGTGGCCCCAACAAGTATCGAGCATTTTGCAAAGGAGCATCAGAATTGGTTGTGGAAATGTGCGACCAAGTTGTCAACGAAGAGGGCAAAGTGGTCCCTTCGAACGAACAGCAAAGGAGTAGCATCACAGAAGTTATGAACGGTTTTGCTTCTGAGGCTCTGAGAACACTCTGCATTGCCTTCAAGGATATTGAAGAATCTTCTAAAAGTGATCGTATTCCTGAGGACAAATACACATTGATAGCTATTGTTGGGATCAAGGATCCAGTGAGGCCTGGAGTAAAAGAAGCTGTGAAGACTTGTTTAGAAGCTGGCATTGTTGTTAGAATGGTGACTGGTGACAACATAAACACTGCTAAAGCAATAGCTAGAGAATGCGGGATACTGACAGATGGAATCGCGATAGAGGGACCAGATTTCCGGAACAAGTCCCCGCAAGAATTGGAAAAGATAATACCAAAAATACAGGTAATGGCCCGATCCTTGCCCCTTGACAAGCACAAACTAGTGACCCTTTTGCGGGAGGATTTTAATGAGGTTGTGGCAGTAACTGGAGATGGGACCAATGATGCCCCAGCGTTGCATGAGGCTGATATTGGACTTGCTATGGGCATTGCAGGGACAGAGGTTGCAAAAGAGAACGCGGATGTGATTGTAATGGATGATAACTTCTCAACCATAGTGAAGGTTACCAGATGGGGCCGTGCTGTTTATATCAATATACAAAAGTTTGTTCAGTTCCAGTTAACAGTTAATGTTGTAGCTCTCATGCTGAATTTCGTTTCAGCCTGCGTGTCAGGCTCTGCTCCTCTTAGTGCTGTTCAAATGCTTTGGGTAAACATGATTATGGACACTCTCGGCGCGTTGGCCCTGGCTACAGAACCTCCTCATGATGGGCTGATGAAGAGGCCACCCATTGGAAAGAACGCCAAATTCATCACCAGGATCATGTGGAGGAACATAATTGGTCAGAGCATCTATCAAATTATCGTCCTTTTGGTTCTCAAATTTCGTGGAGAACAGATTCTCAAGCTCAATGGACCAGATACTACCGTACTTCTGAATACCGTCATATTCAACACCTTTGTATTTTGTCAGGTGTTCAATGAGATAAACAGCCGTGACATGGAGAAGATTAATGTGTTTGAAGGCATGTTAAGCAGCTGGGTTTTCTTGATAGTGATGGGTGTAACGATATGTTCTCAAGCCTTGATAGTTCAATATCTGGGTGCTTTTGCCCAAACGGTACCTCTGAGCCGGGAATTATGGCTAGCAAGCGTGATGATTGGTGCTGCAAGTTTAGTTGTTTCTGTTGTTCTTAAGTGCATTCCAGTTCCATCCAGCACCTACGTCGCCACCCACCATGATGGTTACGAGGAGCTCCCCAGTGGCCCTGATCAGGCATGA 3183 0.4524 MEKYLRENFSVQPKNPSESALRRWRSAVAVVKNPRRRFRMVANLAQRAEAEHKRRKLQEKIRVALYVQKAALHFINAGNRGTGDGGGKSGGGGDGVGGSDSGGSPGYMLSKETQEAGFEIEPDELASIVRSHDKKCLERYEGLEGVARAVRVSLQEGVISVDVEHRQNIYGFNRHAEKPPRSFWMFVWDAMQDLTLIILMACSLVSVGVGILTEGWPKGMYDGVGIILSILLVVFVTSISDYKQSLQFKDLDKEKKNVSIQVTRDGRRQKVLIHDLVIGDIVHLSIGDIVPADGLLISGFGLLIDESTLSGESDAVNIDDRRPFLLSGTTVQDGSAKMLVTSVGVRTEWGRLMDTLNEGGDDETPLQVKLNGVATIIGKIGLGFALVTFMVLTSRFLWGKIAHNEITKWSLNDASNLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSAGCICTDKTGTLTTNHMVVDKIWICGQTKAIKSGNSENVLKPLISEQTFDLLLQSIFQNTGSEIVKGLDGKNKIMGTPTESALLEFGLLLGGDSKFYNDKYKIVKVEPFNSVRKKMSVMVALPGGPNKYRAFCKGASELVVEMCDQVVNEEGKVVPSNEQQRSSITEVMNGFASEALRTLCIAFKDIEESSKSDRIPEDKYTLIAIVGIKDPVRPGVKEAVKTCLEAGIVVRMVTGDNINTAKAIARECGILTDGIAIEGPDFRNKSPQELEKIIPKIQVMARSLPLDKHKLVTLLREDFNEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVMDDNFSTIVKVTRWGRAVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLSAVQMLWVNMIMDTLGALALATEPPHDGLMKRPPIGKNAKFITRIMWRNIIGQSIYQIIVLLVLKFRGEQILKLNGPDTTVLLNTVIFNTFVFCQVFNEINSRDMEKINVFEGMLSSWVFLIVMGVTICSQALIVQYLGAFAQTVPLSRELWLASVMIGAASLVVSVVLKCIPVPSSTYVATHHDGYEELPSGPDQA 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00172 1060 MobiDBLite consensus disorder prediction 77 108 - -
Phco9g00172 1060 Pfam haloacid dehalogenase-like hydrolase 472 790 - -
Phco9g00172 1060 FunFam Calcium-transporting ATPase 793 1039 - -
Phco9g00172 1060 Gene3D - 484 681 IPR023299 GO:0000166
Phco9g00172 1060 SUPERFAMILY HAD-like 473 881 IPR036412 -
Phco9g00172 1060 ProSitePatterns E1-E2 ATPases phosphorylation site. 476 482 IPR018303 -
Phco9g00172 1060 Coils Coil 40 60 - -
Phco9g00172 1060 Gene3D - 157 357 - -
Phco9g00172 1060 SUPERFAMILY Calcium ATPase, transduction domain A 259 355 IPR008250 -
Phco9g00172 1060 FunFam Calcium-transporting ATPase 668 821 - -
Phco9g00172 1060 PANTHER CATION TRANSPORTING ATPASE 112 1037 - -
Phco9g00172 1060 FunFam Calcium-transporting ATPase 16 76 - -
Phco9g00172 1060 Pfam E1-E2 ATPase 259 452 - -
Phco9g00172 1060 PRINTS P-type cation-transporting ATPase superfamily signature 305 319 - -
Phco9g00172 1060 PRINTS P-type cation-transporting ATPase superfamily signature 674 685 - -
Phco9g00172 1060 PRINTS P-type cation-transporting ATPase superfamily signature 696 706 - -
Phco9g00172 1060 PRINTS P-type cation-transporting ATPase superfamily signature 776 795 - -
Phco9g00172 1060 PRINTS P-type cation-transporting ATPase superfamily signature 474 488 - -
Phco9g00172 1060 PRINTS P-type cation-transporting ATPase superfamily signature 800 812 - -
Phco9g00172 1060 PRINTS H+-transporting ATPase (proton pump) signature 634 652 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco9g00172 1060 PRINTS H+-transporting ATPase (proton pump) signature 776 792 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco9g00172 1060 PRINTS H+-transporting ATPase (proton pump) signature 808 833 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco9g00172 1060 NCBIfam calcium-translocating P-type ATPase, PMCA-type 132 1037 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Phco9g00172 1060 Gene3D - 16 76 - -
Phco9g00172 1060 SFLD p-type atpase 456 828 IPR044492 -
Phco9g00172 1060 SMART Cation_ATPase_N_a_2 139 211 IPR004014 -
Phco9g00172 1060 SFLD Haloacid Dehalogenase 456 828 - -
Phco9g00172 1060 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 480 686 IPR023299 GO:0000166
Phco9g00172 1060 CDD P-type_ATPase_Ca_PMCA-like 163 909 - -
Phco9g00172 1060 FunFam Calcium-transporting ATPase 236 357 - -
Phco9g00172 1060 SUPERFAMILY Calcium ATPase, transmembrane domain M 141 1036 IPR023298 -
Phco9g00172 1060 Pfam Cation transporter/ATPase, N-terminus 141 206 IPR004014 -
Phco9g00172 1060 Pfam Cation transporting ATPase, C-terminus 861 1034 IPR006068 -
Phco9g00172 1060 NCBIfam HAD-IC family P-type ATPase 742 859 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco9g00172 1060 NCBIfam HAD-IC family P-type ATPase 571 722 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco9g00172 1060 NCBIfam HAD-IC family P-type ATPase 226 498 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Phco9g00172 1060 Gene3D - 471 821 IPR023214 -
Phco9g00172 1060 FunFam Calcium-transporting ATPase 484 681 - -
Phco9g00172 1060 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Phco9g00172 1060 Gene3D - 189 1035 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00172 Phco-Chr9 1130547 1139268 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00172 9 1130547 1139268 Phco9g00172 9 1130547 1139268 ECH