Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00168 ATGGATGGTTACGAAGCTACACGAATTGTGTTCCTCAGGATCCAAACTTTGGACCCTGAAAATGCTTCCAAAATCATGGGTTTACTTCTGCTTAAAGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGTCCAGAAGCACTTGTTCACTCAGTGATTGTTAAAGCCCGCAAGGAGTTAGGTTTACCCTCGAACTCTCCGCCAACACCCTCCACTCCTCCTTCTCCTTCACCCTTCCTTCCTAGGCAGAACTCTACTTCTTCTAGGCTCAGTGGTATCAACCTCCCTCCCGCTCTCACCATTCCAAACCCTTCTTCTTCATGGCCTACTATGTCTGAGCTTCAAACCCCTGATGGTTTGATGAGCCCCAACCATTTGATTGTTGGCTCTTCTACTTCTTCATCTTCCTTGTCCTTTTATGCAAATGGAGGCTCAGATCCAATTGATGACTTCCAACTTCAAGACCAGCTCTCTTTCCTGAATGATGGTTCTGCTCCTGCTCACAAAAACAACCCTGATTTGTTTTACCCTCGTCACTCAGACTTGTCTTCAAGTCCTACTGCTGCTGCTGACCCTGCTCTCTTTCCTTCCTACGACTGGGGAGGGTCTCTTCATCGCAGGAGTTGTTCTGTCAATGATGTTTGTTTGGGCTCTGAGGACTCCAATTCTGGGTTGGGGTGGAAGCCTTGTCTTTACTTTGCTCGGGGATACTGTAAAAATGGCACTAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATACTGATGCTGCTGCTCCTGCTGCAATGGTTGGGTCTCCTAGCAAGCTTGAGATGATGGAGCAGTGCCATGAGCTTTTCAGATCCAAATCTTCACAACAAAGACTGGCTGCTGCTTCTCAGCTCATGGCCTCTTCTACTTTTCCATACACCCCAAAGTGCATGAATTTGCTGTTGCAGCAGCAACAGAATGATACTCAAAGAGCTGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGAAATGATTTTTCTCTGAACAGTCCTGGAATGATAAACCCAGCTTCCCGGCAGATCTACTTGACTTTCCCGGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGCCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGCTTTGTTACCTTTGTTTACCCGGAGACAGTGAAGCTTATTCTATCTAAAGGAAATCCTCATTTTGTGTGTGATGCTCGAGTGCTTGTTAAACCTTACAAGGAGAAGGGCAAAGTCCCGGACAAGAAGCATCAACAGGTAGATAGAGGAGATTTTTCACCAAGTGGTACTCCTACTGGACTAGATGCTAGAGACCAATTTGATCTTCAACTTGGTGGCAGAATGTTCTACAATACGCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGGAAGCTGATTTGCAGCAAGCTCTTGAGCTCCAAAGTAGGAGGCTGATGGGTCTGCAGCTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTCCACTGGAAGTCCAATTCCTTCCCCCACCCACTCTCTTAACATGTTCAACCAAAATCTTCTTCCTTCCTTTCACAATATTTCCGAGGCCCCAAGGGAGAATGGTTCAACTTCTGCTCCACCTTGTACTGCTTCAGTTTCTGCTGGTTGA 1710 0.4655 MDGYEATRIVFLRIQTLDPENASKIMGLLLLKDHGEKEMIRLAFGPEALVHSVIVKARKELGLPSNSPPTPSTPPSPSPFLPRQNSTSSRLSGINLPPALTIPNPSSSWPTMSELQTPDGLMSPNHLIVGSSTSSSSLSFYANGGSDPIDDFQLQDQLSFLNDGSAPAHKNNPDLFYPRHSDLSSSPTAAADPALFPSYDWGGSLHRRSCSVNDVCLGSEDSNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDTDAAAPAAMVGSPSKLEMMEQCHELFRSKSSQQRLAAASQLMASSTFPYTPKCMNLLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMINPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKHQQVDRGDFSPSGTPTGLDARDQFDLQLGGRMFYNTQDMLWRRKLEEEADLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHSLNMFNQNLLPSFHNISEAPRENGSTSAPPCTASVSAG 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00168 569 SUPERFAMILY CCCH zinc finger 228 250 IPR036855 GO:0046872
Phco9g00168 569 SMART c3hfinal6 227 251 IPR000571 GO:0046872
Phco9g00168 569 MobiDBLite consensus disorder prediction 82 116 - -
Phco9g00168 569 SUPERFAMILY RNA-binding domain, RBD 370 446 IPR035979 GO:0003676
Phco9g00168 569 MobiDBLite consensus disorder prediction 61 116 - -
Phco9g00168 569 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 250 IPR000571 GO:0046872
Phco9g00168 569 Gene3D - 219 295 - -
Phco9g00168 569 MobiDBLite consensus disorder prediction 436 462 - -
Phco9g00168 569 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 548 - -
Phco9g00168 569 MobiDBLite consensus disorder prediction 546 569 - -
Phco9g00168 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 359 435 IPR000504 GO:0003723
Phco9g00168 569 ProSiteProfiles Zinc finger C3H1-type profile. 225 252 IPR000571 GO:0046872
Phco9g00168 569 SMART rrm1_1 360 430 IPR000504 GO:0003723
Phco9g00168 569 CDD RRM_AtC3H46_like 361 430 IPR034365 -
Phco9g00168 569 MobiDBLite consensus disorder prediction 67 81 - -
Phco9g00168 569 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 366 437 - -
Phco9g00168 569 Gene3D - 306 450 IPR012677 -
Phco9g00168 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 416 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00168 Phco-Chr9 1103777 1106019 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00168 9 1103777 1106019 Phco9g00168 9 1103777 1106019 ECH