Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00155 ATGAAGAGATTGAGGTCGAGCGATGATCTTCACTCGTACGGCGGGGACAAGAATAGCAATGGTTGCAAGGATTCCAGTAATCTGAACCGTTCGTTTTCGTCGGCTCAGCGGAGTTTCTATTACAAGTCCGATAATGCGCGCAAGGGTTTGGTCTCGTCTTCGTCGTCCCGGTACGAGAGGGATCGGGCGGTTGAGGAGGATCGGGAGGGTTCGAGGGTGGTTCGGAAGCGATCTGAGCACGATTTCGAGGGATTTGATAGGAGGAAAGGGTTCGATCGGTACAGGGATAGTGATCGGAGTTTGATGCACCGGTCGGAGAGTTTCTGCAGCGGTGGGTCGCGGAGGGATCAGTTTCCGAAGGGTTTTCGGTCGGAGAGGGATAGGTCGCGGAGGGAGGGGAGTGTGTCGTCTTGGCGGAGAGGGTTGAAGGATTTGGATGAAAGGGAGAGGGTGGTGCGTTCGCCCAAGGGTTTGAGGGATGTGAAGTCTCCGTCTTGGTCCAAGGATTCTGTTTCGGAAAGCGAGCAATCTAAGAAGAGATCTTCTTCTCCCAGACCCATCAAAGAGGGTAACTCCAACAAGTCTAAGTCTAAGTCTCCCACTTGGTCTAAGGATTCTGTTTCGGAGAGCGAGCAGTCCAAGAGTGTTGAGGTGAAGAAAGCTGAAGAGGAGTTGTTGCAGCAGGTTCAGAGTGCGAGTAGTAGTGAGATGGAAGAAGGGGAGCTTGAACCTGAACCCCAAACGGAAATGATTGCTCCTGCGAATGAAGACTTGACCCCCTCTGTTACTTTGGAGGCTGATGAGAAACAAGTTCAGAAGAATGAATGCCAACCCGATGATGATGACACTGATGCTATCATGGATGAGAGACAGGAGTTGTCGACTAAGGAAGAAGTGAAACCTAAGGAGGAGGTTGGTTGTGAGGTTAAGGATGCAGAGAAAGAGGATGATAAGGTGCCTGATATTCAGGAGGATCCGGCCGACAAAATGGCTGTTACTGAAACTGAACCTGGTTCTGTGGGGAATGGTAATGACGATAAAAGAGAGGAGTGTTTGGATGTCGGTGCTGAGTGCGAGGAGGAAACAAAGAAGGGTGGGGATGTGGAGAAGGAGAAGGTGGTGTTGAATGAAGACGAGTCTAAAGAGGACAAGGGTGTAGATGTCGGAACGAGGACGGATGTTGTCAAACCTGAGTTAAATGATGGAGTATCAACAGAAAATGAAGTCCCCAAGGAAGTGGACAAAGAAGTGACGGTGGTGGGTGTGGTCAACAATGTGAAGGATAAGGGGAAAGGAATTTCTGTTGCACTTGCACCTCCTACTGATGTTGCTCATTCTTCGGATGATGGCTTGTGGATGGACAGAGGATCGATGGACCTCCCAACGTGTTCTGTTGATGTTATAGAAGGTCCAAGCACAAGGGGATTTGAGTTGTTCTCCAGATCTCCTGTTAGGAAAGTGGAGAAAGTGGACCACACGGTTCTCTACAAGCACAAGGATGACTTGGAGCAGCTTGATCTTACTCTTAGCTTGCCGAATGTTTTGTTACCTATTGGTGTTCATGAGACTGGAGCTCATGAAACAACATCACAAGCCCCTGGATCCCCTAGTCAAGCACGGAGTGTGCAATCTTTAAGTAATACTTTTTGTACCAACTCAGATGGTTTTCCTGCATCAATGTCCCTTTCAGGTTCTCAATCATTTTATCACAATCCAAGCTGTTCTTTGACAAAAAACTCTGTGGACTATGAACAATCTGTTGGCAGTCGCCCTTTGTTCCAGGGAATAGATCAAGTTTCCCAGGGGTGTTGGCAAGGCCAGTCTCAGAGTGATCCTAAACAGAAAGAAGTTCCTCTTGGTCAAAGAACATCGGTTAGTGGAAATGGCTCCCTTTTCCAGTCTCAGACATCGTGGGGTGTTTTAGACAGTCAAGCTGTGAAGGGTCAACATTCCAGAGTTCTAGAAGGAAGTTCAAAAATTGCTGGTGGACTTGATAGGCAATTGAGTTTTCACAAGCAATTTTCAGGGCAATTAAGACGCCATGATGATGTTAGATCTCCGCCACAGAGTGTTGGGTCTCATGATATTGGATCAAATTACAGCTTTGAGAAAAAGAGGGAGGTTAGAGACAGGAGTAGTGGTAGTCTGTATCGAACTACCAGCCAGAAGGAACAAGAACAACTAATGGTGGGTGGAGCTGATTTTGTTGAGACAATCATTGCAAGAATTGTTTCTGAACCTGTTCATGCAATGTCCAGAAAATTTCATGAAATGACAGGACAGTCCATAGCATGTCTGAAAGAGGGTATTCGTGAAATCATGCTCAATGCTGATAAACAAGGGCAGATACTTGCTTTCCAAAAAGTTCTTCAGAACAGGTCTGATGTAATCTTGGATGTTCTATTGAAGTGCCACCGAGTGCAACTGGAAATTTTGGTTGCTTTGAAAACTGGTTTAACTCATTTCCTTCAATTAGACAGCAGCATTTCGTCTTCTGAGTTGGCTCAAATTTTTCTGAACTCAAGGTGTAAGAATGTTTCATGTCGAAGTCAGTTGCCCGTAGATGAATGTGATTGCAAGGTTTGTGCGCAGAAAAATGGTTTTTGCAGGGAATGTATGTGCCTTGTGTGTTCTAAGTTTGACAATGCCTCAAATACATGTAGCTGGGTTGGATGTGATGTTTGCCTTCACTGGTGCCATACTGACTGTGGATTACGGGAATCTTATATTAGAAATGGGCATGGGACAAAAGGGATGGCTGAAATGCAGTTTCACTGTATTGCTTGTGACCATCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTTTTTCATAATTTTGCAAAAGAATGGTCTGTTGAAGCCCTTTGCAAAGAGCTTGAATATGTGAAGAGAATTTTTTCTGCTAGCAAGGATATGAGAGGGAGACAGTTGCATGAAATTGCAGAGCAAATGCTGCCAAGGTTGGCAAATAAGTCTAATCTTTCTGAGGTTTTGAGGCACATCATGTCTTTCCTTTTTGATGGTGATTCTTCCAAATTAGCCATGACAGCAAACTTTCCTGGGAAGGAGCAAATTAAAGAAAACAATGGAGTAGCAGGGCCTAGCCAGGAAGCAGCTTGGATGAAATCTATTTATTCAGAAAAGCCACCTCTGTTAGAGAGGCCAGCGAATATCCTTCCTACCTTTGACCAAAATGATAAAAGAACTCTTGCGCAAGAGTTGCAGATGAGTAGCATCCAGAAGGACTACTGTTTTGACGAATTGGAGAGTGTAGTAAAAATTAAACAGGCAGAGGCTAAAATGTTTCAATCACGTGCTGATGATGCTAGAAGAGATGCTGAAAAGTTGAAGCGCATTGCCCTTGCAAAGAATGAGAAAATTGAGGAAGAATATGCCAATCGAATTGCCAAGTTGCGATTGACTGAGACTGATGAAATTCGTAAACAAAAATTTGAAGAAGCCCAAGCATTAGAGAGGGCACATCTGGAGTATTTGAACATGAAAAGGAGAATGGAGACAGACATTAAAGATCTGTTATCCAAAATGGAAGCTACTAAAATGAGCCTTGCCATGTGA 3576 0.4494 MKRLRSSDDLHSYGGDKNSNGCKDSSNLNRSFSSAQRSFYYKSDNARKGLVSSSSSRYERDRAVEEDREGSRVVRKRSEHDFEGFDRRKGFDRYRDSDRSLMHRSESFCSGGSRRDQFPKGFRSERDRSRREGSVSSWRRGLKDLDERERVVRSPKGLRDVKSPSWSKDSVSESEQSKKRSSSPRPIKEGNSNKSKSKSPTWSKDSVSESEQSKSVEVKKAEEELLQQVQSASSSEMEEGELEPEPQTEMIAPANEDLTPSVTLEADEKQVQKNECQPDDDDTDAIMDERQELSTKEEVKPKEEVGCEVKDAEKEDDKVPDIQEDPADKMAVTETEPGSVGNGNDDKREECLDVGAECEEETKKGGDVEKEKVVLNEDESKEDKGVDVGTRTDVVKPELNDGVSTENEVPKEVDKEVTVVGVVNNVKDKGKGISVALAPPTDVAHSSDDGLWMDRGSMDLPTCSVDVIEGPSTRGFELFSRSPVRKVEKVDHTVLYKHKDDLEQLDLTLSLPNVLLPIGVHETGAHETTSQAPGSPSQARSVQSLSNTFCTNSDGFPASMSLSGSQSFYHNPSCSLTKNSVDYEQSVGSRPLFQGIDQVSQGCWQGQSQSDPKQKEVPLGQRTSVSGNGSLFQSQTSWGVLDSQAVKGQHSRVLEGSSKIAGGLDRQLSFHKQFSGQLRRHDDVRSPPQSVGSHDIGSNYSFEKKREVRDRSSGSLYRTTSQKEQEQLMVGGADFVETIIARIVSEPVHAMSRKFHEMTGQSIACLKEGIREIMLNADKQGQILAFQKVLQNRSDVILDVLLKCHRVQLEILVALKTGLTHFLQLDSSISSSELAQIFLNSRCKNVSCRSQLPVDECDCKVCAQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHGTKGMAEMQFHCIACDHPSEMFGFVKEVFHNFAKEWSVEALCKELEYVKRIFSASKDMRGRQLHEIAEQMLPRLANKSNLSEVLRHIMSFLFDGDSSKLAMTANFPGKEQIKENNGVAGPSQEAAWMKSIYSEKPPLLERPANILPTFDQNDKRTLAQELQMSSIQKDYCFDELESVVKIKQAEAKMFQSRADDARRDAEKLKRIALAKNEKIEEEYANRIAKLRLTETDEIRKQKFEEAQALERAHLEYLNMKRRMETDIKDLLSKMEATKMSLAM 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00155 1191 CDD PHD_OBE1_like 873 929 IPR047578 -
Phco9g00155 1191 Pfam PHD - plant homeodomain finger protein 843 963 IPR032881 -
Phco9g00155 1191 MobiDBLite consensus disorder prediction 210 224 - -
Phco9g00155 1191 MobiDBLite consensus disorder prediction 1 29 - -
Phco9g00155 1191 MobiDBLite consensus disorder prediction 118 157 - -
Phco9g00155 1191 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1188 IPR004082 -
Phco9g00155 1191 MobiDBLite consensus disorder prediction 288 331 - -
Phco9g00155 1191 MobiDBLite consensus disorder prediction 699 713 - -
Phco9g00155 1191 MobiDBLite consensus disorder prediction 675 721 - -
Phco9g00155 1191 Pfam Coiled-coil region of Oberon 1063 1179 IPR032535 -
Phco9g00155 1191 Coils Coil 1099 1130 - -
Phco9g00155 1191 MobiDBLite consensus disorder prediction 102 391 - -
Phco9g00155 1191 MobiDBLite consensus disorder prediction 43 79 - -
Phco9g00155 1191 MobiDBLite consensus disorder prediction 341 391 - -
Phco9g00155 1191 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 808 823 IPR004082 -
Phco9g00155 1191 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 834 855 IPR004082 -
Phco9g00155 1191 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 880 900 IPR004082 -
Phco9g00155 1191 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 793 808 IPR004082 -
Phco9g00155 1191 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1125 1147 IPR004082 -
Phco9g00155 1191 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 950 969 IPR004082 -
Phco9g00155 1191 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 754 776 IPR004082 -
Phco9g00155 1191 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1086 1106 IPR004082 -
Phco9g00155 1191 MobiDBLite consensus disorder prediction 186 209 - -
Phco9g00155 1191 MobiDBLite consensus disorder prediction 54 79 - -
Phco9g00155 1191 MobiDBLite consensus disorder prediction 603 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00155 Phco-Chr9 1033723 1038036 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00155 9 1033723 1038036 Phco9g00155 9 1033723 1038036 ECH