Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00093 ATGGGTTTCCGACAAAGGTTAAGGTTTGTGTTGATGATGAGAGCGTTGGTCTGCACCATGCTACCATTGATGAGTTGTGTAAATGTGAGGGGTTTGCAGCATAATTATGGAGAAGCGTTGTCAAAGAGCATATTATTCTTTGAAGGGCAGAGATCAGGGAAGCTGCCACCAACACAGAGAATGACTTGGAGGAAGGATTCTGCACTTCAAGATCTCTATCTTCTCCCGCCACATACTACTACTACTACTGCATTTCCTTTCCTTCCCAAAGTTGACTTGGTCGGGGGTTACTACGATGCTGGTGACAACGTGAAATTCAACTTTCCAATGGCATATTCAACGACCATGTTGGCGTGGAGTGTAATAGAGTTCGGAAAATTCATGGGTCCAGATCTTAAATATGCGCTAGACGCTATTCGTTGGGGCACGGACTATTTTCTGAAAGCCACAAGCATCCCCGGAATAGTGTTTGCACAAGTGGGTGACCCTTATGCTGATCATAACTGCTGGCAGAGACCTGAAGACATGGACACTCCCAGAACAGCCTATGCTGTTAGCAGGGACCACCCTGCCTCTGAACTCTCTGCAGAGATTGCAGCAGCACTTGCAGCTTCTTCTATTGTCTTCAGGAAATATCACGTTGCTTATTCTTCAAGACTTCTCCAAAGGGCCATCATGGTGTTCGACTTTGCTGATAAATACAGAGGATCATACAATGACAGCCTCGGACCGTGGGTATGCCCCTTCTATTGTGATTTTAGCGGCTACCAGGATGAATTGGTGTGGGGAGCAGCATGGTTGTTGAAGGCTACTAAGCGCCCCTATTACTTGGATTACATTGACCAAAATATTCATAATCTCACAAACTTCGCTGAATTTGGATGGGACTCAAAGGACGCTGGCATCAACGTGCTCCTTTCAAAGCTTCTAATTAATAATACCAGCTCAAATTCTAAGCCTTTCATCTTCAATGCGGACAAGTTTGTCTGTGCTGTGCTGCCTGAATCACCATCAGTATCAGTCAAATACTCTCCAGGTGGGCTTCTATTCAAGCCTGGGGGGAGTAACTTACAGCATACAACAGCAATCTCATTCCTGTTTCTGGTTTATGCTGGCTATTTGAAGAAGACAAATAAAGAGATTGACTGTGGCGGTAATGTTTTTGCTTCTCCAACCCGACTTAGAGAAATAGCAAGAGGCCAGGTGGATTACATACTAGGAAGCAATCCACTGAATATGTCGTACATGGTAGGATATGGAGCAAAATATCCTGAAAGAATACATCATCGAGCGTCGTCATTGCCATCAGTGGATGAGTACCCTCCTCACGTTGGTTGCAAAGAAGGATCATTTTATTTTGAAAGCCAAAATCCAAACCCCAACTTGCTCACAGGAGCTGTTGTGGGGGGACCTTATCTCAATGATTCATATGCAGATTATCGAGCAGATTTTGTACACTCTGAACCTACAACATACATCAATGCACCACTTGTGGGTCTTTTCGCCTACTTCAATTCACATTCATCCTAA 1530 0.4444 MGFRQRLRFVLMMRALVCTMLPLMSCVNVRGLQHNYGEALSKSILFFEGQRSGKLPPTQRMTWRKDSALQDLYLLPPHTTTTTAFPFLPKVDLVGGYYDAGDNVKFNFPMAYSTTMLAWSVIEFGKFMGPDLKYALDAIRWGTDYFLKATSIPGIVFAQVGDPYADHNCWQRPEDMDTPRTAYAVSRDHPASELSAEIAAALAASSIVFRKYHVAYSSRLLQRAIMVFDFADKYRGSYNDSLGPWVCPFYCDFSGYQDELVWGAAWLLKATKRPYYLDYIDQNIHNLTNFAEFGWDSKDAGINVLLSKLLINNTSSNSKPFIFNADKFVCAVLPESPSVSVKYSPGGLLFKPGGSNLQHTTAISFLFLVYAGYLKKTNKEIDCGGNVFASPTRLREIARGQVDYILGSNPLNMSYMVGYGAKYPERIHHRASSLPSVDEYPPHVGCKEGSFYFESQNPNPNLLTGAVVGGPYLNDSYADYRADFVHSEPTTYINAPLVGLFAYFNSHSS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00093 509 SUPERFAMILY Six-hairpin glycosidases 29 507 IPR008928 GO:0005975
Phco9g00093 509 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 404 430 IPR018221 -
Phco9g00093 509 PANTHER ENDO-1,4-BETA-GLUCANASE 13 506 - -
Phco9g00093 509 FunFam Endoglucanase 32 509 - -
Phco9g00093 509 Gene3D - 32 509 IPR012341 GO:0005975
Phco9g00093 509 Pfam Glycosyl hydrolase family 9 36 500 IPR001701 GO:0004553|GO:0005975
Phco9g00093 509 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 477 495 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00093 Phco-Chr9 613473 615996 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00093 9 613473 615996 Phco9g00093 9 613473 615996 ECH