Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03302 ATGGCTCACCATTGTTCAAACAAGGCCCTTGGTCTTCTCATTTTTCTGTCTCTTTTTTCAACCATTTATTCTGCTCAATTTGTTCCTGAATTTAGCCATTCTGAACCAGTTGATCCAGCTGATGCAGCAGCACCAGCACCTGAAGTTGAAGATGAAGCAGAACTAGCCCCAGCACCATCTATAGAATTTGAAAATGATGAACCCCTAACTCCACCACCAACTGCAAAAAGAAATGAAAGGCTAAAAAAGGCTCATATTGCTTTGAAGGCATGGAAGAAGGCTATTCACTCCGACCCTTTGAACATAACCGGCAATTGGGTTGGTGAAGATGTTTGCTCTTACAATGGTGTGTATTGTGCTCCTGCCCTTCATGATCCCACCATCAATGTGGTTGCTGGCATTGATCTTAACAATGCAGACATTGCTGGGAACCTCCCTGAAGAGTTAATACACTTGGAAGATATTGCACTTTTCCACATTAACTCCAATAGATTCTGTGGTGTCATCCCACAGAGCTTGGAGAATCTCACACTCATGCATGAGTATGATATCAGCAACAATCGCTTTGTTGGTCGCTTTCCTTCTGTGGTCCTCACATGGCCAAACTTGAAGTACTTGGACATCAGATTCAATGACTTTGAAGGAGCCATACCCCCAGAGCTTTTTCGTAAGGATCTTGATGCAATCTTTTTGAACAACAACCGTTTCACATCCAACATCCCAGACTCTCTAGGAAACTCCAGCGCCTCGGTGGTCACCTTTGCCCACAACAATTTCAAAGGCTGCATTCCAAATTCTATGGGAAACATGAAGAACTTGAATGAGATTGTGTTCATAGGAAACAACCTTGGAGGATGCTTCCCACAAGAGATTGGAATGATGGAAAACCTGAGGGTTTTGGATTTCAGCGACAATGGGTTTGTTGGGACTCTTCCTAACTTGTCAGGGTTGAAGAATGTTGAGGTCATTGACATTGCACACAACAAGCTAAGTGGATATGTGTCTAACACTGTTTGCCAACTTCCTTCGTTGAAGAACTTCACATTCTCTCACAACTACTTCAATGGAGAAGCTCAGAGTTGCGTGCCTTCATCCAATTCGTTGGTGGCTTTGGATGACTCGAGCAATTGTTTGTCAGGAAGGAAGAATCAGAAGTCATCGATGAAGTGCTTGCCAGTGCTGACTCGCCCTGTGGATTGCAGCAAGCATTGTGGCAAAGGGAATGACCATAGCCATTCACCAAAGCCAACTACTCCATCTCCTAAACCTCCAACACCAAAGGTTGTACACTCTTCACCACCTCCTCCTCCTTCTGTACACTCCCCACCACCACCTCCTCCAGTTCACTCCCCACCACCACCTCCCCCTGTCCATTCCCCACCACCACCACCAGTCAACTCTCCACCTCCACCACCACCTGTTAACTCACCACCTCCACCAGTTCAATCCCCACCACCACCAGTTTTCTCTCCTCCTCCGCCAGTTTTCTCACCACCACCACCCCCAGTTTTCTCCCCTCCTCCCCCAGTCTTCTCTCCACCACCCCCAGTTTCCTCTCCACCACCACCAGTTCACTCTCCTCCCCCACCAGTTTCCTCTCCACCACCACCAGTTCACTCTCCTCCCCCACCAGTTTCCTCCCCACCACCACCAGTTCACTCTCCTCCGCCACCAGTTCACTCCCCACCACCACCACCAGTCTCCTCTCCACCACCACCAGTTTCCTCTCCTCCACCACCAGTTTCCTCCCCACCACCACCAGTTCACTCTCCACCACCACCAGTTCACTCTCCTCCACCACCCGTTTTCTCTCCTCCACCACCCGTTTTCTCTCCACCACCCCCAGTTTCTTCCCCCCCACCACCTCCCCCAGTTTCCTCTCCACCACCACCAGTTAACTCTCCTCCACCACCAGTTTCCTCCCCACCACCACCACCAGTTTCGTCTCCTCCTCCACCAGTTTCCTCCCCACCACCACCAGCTTCCTCTCCTCCTCCACCAGTTTCCTCCCCCCCACCACCAGTTTCCTCTCCTCCTCCACCAATTTTCTCCCCACCACCACCAGTTTCCTCTCCACCACCCCCAGTGTACTCTCCACCACCACCAGTGTACCCTCCTCCACCACCAACATGGGATGATGTTTTCCTTCCACCACACTTTGGCGCTTCATACAAGTCACCTCCTCCACCAGTAATTGTTGGATACTAA 2208 0.5005 MAHHCSNKALGLLIFLSLFSTIYSAQFVPEFSHSEPVDPADAAAPAPEVEDEAELAPAPSIEFENDEPLTPPPTAKRNERLKKAHIALKAWKKAIHSDPLNITGNWVGEDVCSYNGVYCAPALHDPTINVVAGIDLNNADIAGNLPEELIHLEDIALFHINSNRFCGVIPQSLENLTLMHEYDISNNRFVGRFPSVVLTWPNLKYLDIRFNDFEGAIPPELFRKDLDAIFLNNNRFTSNIPDSLGNSSASVVTFAHNNFKGCIPNSMGNMKNLNEIVFIGNNLGGCFPQEIGMMENLRVLDFSDNGFVGTLPNLSGLKNVEVIDIAHNKLSGYVSNTVCQLPSLKNFTFSHNYFNGEAQSCVPSSNSLVALDDSSNCLSGRKNQKSSMKCLPVLTRPVDCSKHCGKGNDHSHSPKPTTPSPKPPTPKVVHSSPPPPPSVHSPPPPPPVHSPPPPPPVHSPPPPPVNSPPPPPPVNSPPPPVQSPPPPVFSPPPPVFSPPPPPVFSPPPPVFSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPVHSPPPPVHSPPPPPVSSPPPPVSSPPPPVSSPPPPVHSPPPPVHSPPPPVFSPPPPVFSPPPPVSSPPPPPPVSSPPPPVNSPPPPVSSPPPPPVSSPPPPVSSPPPPASSPPPPVSSPPPPVSSPPPPIFSPPPPVSSPPPPVYSPPPPVYPPPPPTWDDVFLPPHFGASYKSPPPPVIVGY 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03302 735 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 23 543 - -
Phco8g03302 735 SUPERFAMILY L domain-like 90 380 - -
Phco8g03302 735 Gene3D Ribonuclease Inhibitor 250 398 IPR032675 -
Phco8g03302 735 FunFam Leucine-rich repeat extensin-like protein 1 85 246 - -
Phco8g03302 735 MobiDBLite consensus disorder prediction 404 735 - -
Phco8g03302 735 MobiDBLite consensus disorder prediction 34 77 - -
Phco8g03302 735 Gene3D Ribonuclease Inhibitor 82 245 IPR032675 -
Phco8g03302 735 MobiDBLite consensus disorder prediction 416 714 - -
Phco8g03302 735 PRINTS Proline rich extensin signature 466 487 - -
Phco8g03302 735 PRINTS Proline rich extensin signature 430 446 - -
Phco8g03302 735 PRINTS Proline rich extensin signature 413 425 - -
Phco8g03302 735 PRINTS Proline rich extensin signature 453 465 - -
Phco8g03302 735 ProSiteProfiles Leucine-rich repeat profile. 296 318 IPR001611 GO:0005515
Phco8g03302 735 Pfam Leucine rich repeat N-terminal domain 87 119 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03302 Phco-Chr8 47666805 47669012 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g03302 8 47666805 47669012 Phco8g03302 8 47666805 47669012 ECH