Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02937 ATGGAGATCGCTCACGAGTCACCTCCTTCCCTCGACGGAGGCCCCATCCCCGTCGAGACACTCGCCAATTCTCCGTCGTCGTCTTCCCCTTCCTCCTCCTCTTCTTCCTCCTCCGCTTCGTCGCCGCGCGGTTCCAAGGGAAAGGAGGTCGAGTCGACCGCTTCGGCGAAGGGGACGGCAGCCGCGCCAGCCAAGTACGATGACGAGGAGGAGGAGGAAGAGGACGTGTGCCGGATTTGCCGGAACCCTGGTGACGCCGAGAATCCACTACGGTATCCGTGCGCGTGCAGCGGGAGCATCAAGTTTGTGCATCAGGATTGTCTCCTTCAATGGCTTAATCACAGCAACGCGCGCCAATGCGAGGTCTGCAAACATGCATTTTCATTCTCTCCTGTTTATGCGGATAATGCCCCGGCTAGGTTACCTTTTCAAGAGTTTGTGGTTGGAATGGCAATGAAAGCATGCCATGTTCTTCAATTCTTTTTGCGCCTGAGTTTTGTGCTCTCTGTGTGGCTCTTAATTATACCTTTCATAACATTCTGGATATGGCGATTAGCTTTTGTCAGGAGTTTAGGTGAAGCCCAGAGGTTATTCTTAAGCCATTTATCGACAGCAGTTATCCTGACCGATTGCCTCCATGGTTTTCTACTTTCTGCAAGCATTGTCTTCATTTTTCTTGGGGCCACTTCTTTGAGAGATTACTTTAGGCATTTGCGAGAAATTGGGGGACAGGATGCTGATAGAGAAGATGAAGTGGACAGAAATGGTGCTCGAATGGCTAGAAGACCTCCTGTACAAGCTAATCGTAATGCCAATGCTGACGGGAATGGTGAAGATGCTGGTGGAGCGCAAGGAATTGCAGGTGCAGGTCAAGTAATTAGGAGAAATGCTGAAAACGTCGCTGCACGGTGGGAGATGCAAGCAGCACGACTTGAGGCACATGTTGAACAGATGTTTGATGGTCTGGATGATGCTGATGGAGCAGAAGATGTTCCCTTTGATGAACTTGTTGGCATGCAGGGTCCAGTTTTTCATTTGGTTGAAAATGCATTTACTGTGCTGGCGAGCAATATGATTTTCCTTGGTGTTGTAATCTTTGTGCCATTCTCATTGGGTCGTATCATACTCCATTACCTATCCTGGTTCTTCTCAACTGCTAGTGGTCCTGTGTTGTCAGCTGTGCCCCCCCTTGCAGACACATCTCTTTCTCTGGCAAATATTACTTTAAAGAATGCATTAACAGCTGTTAAAAACTTGTCATCTGAAACTCAAGAAAGTGGACCAATTGGTCAGGTTGCAGAAATGATGAAAGCCAATGCTAGTGAATTGAGTGAAATGTCAAACAACATAACATCTGCCTCAGCTGTTATCTTGAAAGGAGGATCAATTGGAACTTCAAGGCTTTCTGATGTTACCACTCTGGCTATTGGATATGTTTTTATACTTACTCTAATTTTCTGCTACTTTGGGATTGTTGCTGTAATTCGTTACACCAAGGGTGAGCCTTTGACCATGGGAAGGTTTTATGGCATTGCTTCTATAGCAGAGACAATTCCATCTCTCTTCAGGCAGTTTTTGGCAGCAATGAAGCATTTGATGACCATGGTTAAGGTTGCTTTCCTCTTAATCATTGAACTCGGGGTATTTCCTTTGATGTGTGGATGGTGGCTTGATGTTTGTACCATTCAGATGTTTGGGAAGACAATGGTTCACAGAGTTCAGTTCTTCTCTGCATCCCCTTTAGCAAGCTCATTGGTTCATTGGGTTGTTGGGATTGTGTACATGCTACAAATTAGCATATTTGTCAGCCTTCTTAGAGGGGTTTTACGTAATGGAGTTTTGTACTTCCTCCGGGACCCTGCGGATCCAAATTATAATCCATTTCGTGATCTTATAGATGATCCCGTGCACAAACATGCTCGCAGGGTTCTATTATCTGTCGCAGTTTATGGGAGTCTGATTGTGATGCTGGTATTCTTGCCTGTCAAACTTGCCATGCGGATGGCACCTTCTATTTTCCCACTTGACATATCGGTATCTGATCCATTCACTGAAATTCCAGCTGACATGCTTCTCTTTCAGATTTGTATCCCATTTGCTATTGAGCATTTTAAATTGAGGACAACTATAAAATCCCTACTGCGCTATTGGTTTACTGCTGTTGGTTGGGCTCTTGGTTTGACTGATTTCTTACTGCCTAGACCTGATGACAGTGTAAATCAAGATAATGGAAATGGGGAGCCAGGTAGGCAAGAAAGGCTACAAGTAGTACAAGCTGGAGTGCATGATCTGGGTTTGGTGCCATTTGCAGGTGATAATTTGAACAGGGCCGTTAGTACAGTGGGAGAACTGAATGCTGGAGAGGATTATGATAATGATGAGCAATCCGACTCTGACAGTTATGCCTTTGTGCTTCGCATTGTTCTCTTACTGGTGATTGCTTGGATGACTCTCCTTGTCTTCAACTCTGCTCTGATAGTTGTACCAATTTCACTTGGACGGGCACTTTTCAATTTTATTCCTCGCCTTCCCATAACTCATGGCATTAAATGCAATGATCTGTATGCATTTATCATCGGAAGCTATGTAATCTGGACTGCTGTTGCTGGAGTTAGATACTCAATTGAACAGGTAAGAAGAAGGAGAGCTTCTGTTTTGTTTGGCCAAGTATGGAAATGGTGTGGCATTCTTGTGAAGAGTTCTGCACTTCTGTCTATATGGATATTCGTTATCCCAGTGCTAATTGGTCTTCTCTTTGAGCTTTTGGTCATTGTGCCAATGAGAGTTCCAGTGGATGAAAGTCCAGTATTCCTCCTTTATCAAGACTGGGCATTAGGCCTTATATTTCTGAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTGGTGGATGAAAGTTGGCGAGTCAAATTTGAGAGGGTGAGAGAAGATGGGTTCTCCAGGTTGCAAGGTCTATGGGTCCTCCGGGAGATTGTACTTCCGATCATAATGAAGTTGTTGACGGCATTATGTGTACCTTATGTTTTGGCCAAAGGTGTATTTCCAGTTCTTGGGTATCCGTTGGTGATCAATTCTGCTGTTTATCGGTTTGCATGGTTGGGATGCCTCTGTTTCAGTTTCTTGTGCTTCTGTGCCAAGAGATTCCATGTCTGGTTCACAAATCTCCATAACTCCATACGCGATGACCGGTATCTCATTGGCCGAAGGTTGCATAATTATGGAGAACATGTTGAGAAAGCAAATGAAGCAGGAACTTCTACAGAGTTGCAGGACACTATCTCACTTGGTACGGGCTTAAATCAACAAGATCATGATGCAGATGTTGGACTACGGTTGAGGCGTGTAAATCATCAACAGGTAGGCTGA 3375 0.4495 MEIAHESPPSLDGGPIPVETLANSPSSSSPSSSSSSSSASSPRGSKGKEVESTASAKGTAAAPAKYDDEEEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYADNAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEVDRNGARMARRPPVQANRNANADGNGEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLSWFFSTASGPVLSAVPPLADTSLSLANITLKNALTAVKNLSSETQESGPIGQVAEMMKANASELSEMSNNITSASAVILKGGSIGTSRLSDVTTLAIGYVFILTLIFCYFGIVAVIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMKHLMTMVKVAFLLIIELGVFPLMCGWWLDVCTIQMFGKTMVHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDDSVNQDNGNGEPGRQERLQVVQAGVHDLGLVPFAGDNLNRAVSTVGELNAGEDYDNDEQSDSDSYAFVLRIVLLLVIAWMTLLVFNSALIVVPISLGRALFNFIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQVRRRRASVLFGQVWKWCGILVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLAKGVFPVLGYPLVINSAVYRFAWLGCLCFSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNYGEHVEKANEAGTSTELQDTISLGTGLNQQDHDADVGLRLRRVNHQQVG 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02937 1124 CDD RING_CH-C4HC3_MARCH6 76 125 - -
Phco8g02937 1124 MobiDBLite consensus disorder prediction 1 69 - -
Phco8g02937 1124 MobiDBLite consensus disorder prediction 20 48 - -
Phco8g02937 1124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 135 IPR013083 -
Phco8g02937 1124 SUPERFAMILY RING/U-box 71 127 - -
Phco8g02937 1124 Coils Coil 294 314 - -
Phco8g02937 1124 PANTHER SSM4 PROTEIN 58 1079 - -
Phco8g02937 1124 ProSiteProfiles Zinc finger RING-CH-type profile. 69 130 IPR011016 GO:0008270
Phco8g02937 1124 FunFam Probable E3 ubiquitin ligase SUD1 62 135 - -
Phco8g02937 1124 Pfam RING-variant domain 77 123 IPR011016 GO:0008270
Phco8g02937 1124 SMART ringv_2 76 124 IPR011016 GO:0008270
Phco8g02937 1124 MobiDBLite consensus disorder prediction 246 283 - -
Phco8g02937 1124 ProSiteProfiles Zinc finger RING-type profile. 77 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02937 Phco-Chr8 43203998 43210231 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02937 8 43203998 43210231 Phco8g02937 8 43203998 43210231 ECH