Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02928 ATGCCTGGAAGTTTAGAACCCTTGGATTTGGGGGTTCACATACCCTACCACTTCAGATGCCCCATCTCGCTTGAACTCATGAGAGACCCAGTCACCGTCTGCACCGGTCAAACCTACGACCGTCCCAGCATCGACTCCTGGGTTAGCGCCGGCAACACTACCTGCCCCGTCACCCGTGCCACTCTCACCGACTTCACCCTAATCCCCAACCACACCCTCCGACGCCTTATCCAAGAGTGGTGCGTGGCAAACCGTGCTTTCGGTGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCGGCCTTGGTTCGCTCCCTTCTCAATCAAACATCCTCCGATTCCGCTCCACCTCACCTTCGTCTCTCTTCTCTCCGACGACTCAGACAACTGGCTCGTGACTCCGACAAGAATCGCTCCCTCATTTCCTCTCACAACGTCCGCCAGATCCTTCTCCCCATTATTTTCAACGGTGCCAACGAGTTGAACCACGAGGCGCTCGCGCTACTCGTTTTGTTCCCGCTTGGCGACTCCGAATGCGCCGCGCTCGCTTCCGACTCCGAGAAGATTAATTATCTCTCGCGGTTGCTCTCGCACAACTCGCTTGACGTCCGAGTCAACTCGGCCGCGTTGATTGAGATCGTCGTTGCCGGCACGCACTCGCCGGAGCTCCGCGCGCGGGTGTGCGAGGTTGATGAAATCTACGACGGAGTCGTGGACTTGCTCCGCAGCCCGATCTCGTACCCACGCGCGCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTGTGCTTGGTGAAGCAGACGCGGCACAAGGCCGTGGCCGCTGGCGCGCCGGCGGTGCTCGTCGACAGGCTCGCGGACTTCGAGAAATGCGACGCGGAGAGGGCGCTTGCCACGGTGGAGCTCCTTTGCAGGATTCCCGCGGGATGCGAGGCGTTCGCTGGCCACGCACTGACGGTGCCGATGCTGGTGAAGATAATCCTGAAGATATCTCATCGCGCGACGGAGTACGCGGCCGGAGCGTTGCTGTCCCTGTGCTCCGAGTCGGAGCGGTGCCAGCGAGAGGCGGTGACGGCGGGGGTGTTGACTCAGCTTCTGCTTCTGGTGCAGAGCGATTGCACGGAGAGAGCCAAGAGGAAGGCCCAGATGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTGCATCGGAAATTCTGACGATTTTGCATGCAGCCAGGTTGTTGTGGTTCCCTTTTGA 1242 0.5982 MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRPSIDSWVSAGNTTCPVTRATLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQTSSDSAPPHLRLSSLRRLRQLARDSDKNRSLISSHNVRQILLPIIFNGANELNHEALALLVLFPLGDSECAALASDSEKINYLSRLLSHNSLDVRVNSAALIEIVVAGTHSPELRARVCEVDEIYDGVVDLLRSPISYPRALKIGIKALFALCLVKQTRHKAVAAGAPAVLVDRLADFEKCDAERALATVELLCRIPAGCEAFAGHALTVPMLVKIILKISHRATEYAAGALLSLCSESERCQREAVTAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDCIGNSDDFACSQVVVVPF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02928 413 Gene3D - 93 402 IPR011989 -
Phco8g02928 413 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Phco8g02928 413 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Phco8g02928 413 PANTHER WDSAM1 PROTEIN 13 397 IPR045185 GO:0061630
Phco8g02928 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Phco8g02928 413 CDD RING-Ubox_PUB 15 67 IPR045210 -
Phco8g02928 413 SUPERFAMILY RING/U-box 12 90 - -
Phco8g02928 413 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Phco8g02928 413 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Phco8g02928 413 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02928 Phco-Chr8 43120919 43122160 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02928 8 43120919 43122160 Phco8g02928 8 43120919 43122160 ECH