Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02744 ATGGTTTCTCACAAATCCATCCTTGCTGTAACAACAATGGTGTACTATTATGAGGTTAAGCTAGGAAAGTTGGACAGTTATAGCAGAGCCGTCACTTGTTTTTTTGGCAACACAAAGAACCTCTCTCATCTCTCTCTCTTTCTCTCTGTGTGTCCTCTGCTGAATTTCTGTTCACATTTCACCAGAAGCTACAACATGAGTGCCTTGAGTTTTAGGGGCTTCACATACATGTTTCTCATTGTAGTTCTCATTTGGTCTTCTAATTTTGAAGCCTGCATTGCAAGAAGAGGCAAGCACTGGAGGCAAAGCATCAGGGATGTCTCAGCTGCTGTGTATAAGAAAAAAGGAAAGAATTATGGAAATGGTCACAACAAAAACCATGGTGGAGGATCAAAACCAAAGCCTCCATCGCATAAAGGCACCCCAACATTACCAAAGCCTCCACCTCATAAAAACACTCCCTCACCACCATATCCACCACCGTCAAATGAGGAAAACCCCACAACTCCCCCACCAAAACCTTACAATGGTGGCCATTCTTCTACCACCACCACCTTCAATGTGCTAGATTTTGGTGCCAAGGGAGATGGAAAAACTGATGACACAAAGGCATTTCAAGCAGCTTGGGCTGAAGCTTGCAAAGTAGAGGCATCAACCATGGTGATTCCATCAGACTACGTCTTCTTTGTGGGGCCCATTTCATTCTCGGGCCCATACTGTAAACCCAACATCGTTTTTCAGCTTGATGGCACCATTGTTGCACCAACAAACCCCAATGCCTGGGGCAGAGGACTACTACAGTGGTTAGAATTTACTAAGTTGGTGGGAATTACCATTCAAGGAAATGGTATCATTGATGGAAAAGGCTCTGTGTGGTGGCAAGATCATCAATATGATGATCCTATAGATAATGAAGAAAAACTCATAGTCCCTTTAAACCAGACTATACCAAGTCCCCCACTGCCGATTCAAAGTGAGCTGGGAGGAAAAATGCCATCCGTCAAGCCAACTGCACTGCGGTTCTATGGGAGCTTTAATCCAACAGTTACAGGCATAACTATTCTAAATAGTCCACAATGCCACCTCAAGTTTGACAACTGCAATGGGGTCTTGGTCCATAATGTGAGCATATCATCCCCTGGGAACAGTCCTAACACAGATGGAATTCACCTTCAGAACTCCAAAGATGTATTGATATATGGCAGCACAATGGCATGTGGAGATGACTGTATTTCCATACAAACTGGATGCTCAAACGTATATGTACACAATGTCAACTGTGGACCAGGGCATGGAATCAGCATTGGAAGTCTAGGAAAGGATAACACCAGAGCCTGTGTTTCCAACATTACTGTCAGGGATGTCAACATGCACAACACAATGACTGGCGTCAGAATCAAAACATGGCAGGGTGGGTCAGGCTCTGTACAAGGAATACTATTCTCAAATATACAAGTTTCTGAAGTTCAATTCCCAATTGTGATCGATCAATTCTACTGCGATAAAAGAACCTGCAAAAACCAAACATCAGCTGTTTCTCTGGCTGGAATCAACTATGAAAGGATAAGGGGGACATACACAGTTATGCCAGTCAACTTTGCCTGCAGTGATAGCCTTCCTTGTGTAGATGTTTCTTTAACCGCTGTCGAGTTGAAACCACTTCAAGAACAAAACCATCTTTATGATCCTTTCTGCTGGCAGACTTATGGTGAATTGAAAACTCCAACACTCCCACCAATTGGTTGTCTACAGATTGGGAAGCCCACGAACAATCGGATTCAGACAGATCATGATTTATGTTGA 1803 0.4343 MVSHKSILAVTTMVYYYEVKLGKLDSYSRAVTCFFGNTKNLSHLSLFLSVCPLLNFCSHFTRSYNMSALSFRGFTYMFLIVVLIWSSNFEACIARRGKHWRQSIRDVSAAVYKKKGKNYGNGHNKNHGGGSKPKPPSHKGTPTLPKPPPHKNTPSPPYPPPSNEENPTTPPPKPYNGGHSSTTTTFNVLDFGAKGDGKTDDTKAFQAAWAEACKVEASTMVIPSDYVFFVGPISFSGPYCKPNIVFQLDGTIVAPTNPNAWGRGLLQWLEFTKLVGITIQGNGIIDGKGSVWWQDHQYDDPIDNEEKLIVPLNQTIPSPPLPIQSELGGKMPSVKPTALRFYGSFNPTVTGITILNSPQCHLKFDNCNGVLVHNVSISSPGNSPNTDGIHLQNSKDVLIYGSTMACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMTGVRIKTWQGGSGSVQGILFSNIQVSEVQFPIVIDQFYCDKRTCKNQTSAVSLAGINYERIRGTYTVMPVNFACSDSLPCVDVSLTAVELKPLQEQNHLYDPFCWQTYGELKTPTLPPIGCLQIGKPTNNRIQTDHDLC 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02744 600 SUPERFAMILY Pectin lyase-like 182 599 IPR011050 -
Phco8g02744 600 MobiDBLite consensus disorder prediction 138 174 - -
Phco8g02744 600 FunFam polygalacturonase At1g48100 175 585 - -
Phco8g02744 600 Pfam Pectate lyase superfamily protein 186 210 IPR024535 -
Phco8g02744 600 Gene3D - 176 585 IPR012334 -
Phco8g02744 600 MobiDBLite consensus disorder prediction 115 182 - -
Phco8g02744 600 PANTHER - 183 570 - -
Phco8g02744 600 ProSitePatterns Polygalacturonase active site. 424 437 IPR000743 GO:0004650|GO:0005975
Phco8g02744 600 SMART pbh1 417 437 IPR006626 -
Phco8g02744 600 SMART pbh1 476 497 IPR006626 -
Phco8g02744 600 SMART pbh1 274 295 IPR006626 -
Phco8g02744 600 SMART pbh1 447 468 IPR006626 -
Phco8g02744 600 SMART pbh1 394 415 IPR006626 -
Phco8g02744 600 SMART pbh1 367 393 IPR006626 -
Phco8g02744 600 Pfam Glycosyl hydrolases family 28 334 552 IPR000743 GO:0004650|GO:0005975
Phco8g02744 600 Pfam Glycosyl hydrolases family 28 215 296 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02744 Phco-Chr8 40495222 40501273 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02744 8 40495222 40501273 Phco8g02744 8 40495222 40501273 ECH