Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02658 ATGAGCATCTCCACCACCCTTTCCTTCGACCCTCTCTTTAGCTTCAATCACTGCGTCAACAGAGAAAGAGAACCCTCCATTCACTGTTCCAAGCCAAAGCTGTTCTCTCTGACTTCCTCCTCCACCCTCACCCTCTTCAACTCCAACAACAACAACAACTGTACCTATAACTATGCCTCTTGCAAACCCCACAGGTTCCACACTCCAAAGTTTGAGTCTTTTGCCACAAACACTGATACCCTTGAGTCTCTTCAGTCTTCTGATGTCTTGTTCGACCGGAGTTTCCCCATCAACCGAACTGAACTGGTGGAGGGAAAGATCTTTGTAAGATTGGATCATGGCAAAGATTTGGGAAATTGGGAGCTTACAGTGGCTTGCAATCTAACAGGGAAATGGATTCTTCATTGGGGAGTTTCCCGTGTGGATGATGTTGGAAGTGAATGGGATCAACCTCCTCGGGATATGATACCACCTGGATCTATTCCTATTAAGGACTATGCAATAGAAACACCTATGCAGAAATCATTGTCGTCTGCTGAAGGAGATGCTTTACATGAAGTCAAGATCGATCTTAAACCCAACAATGATATTTCAGCCATTAATTTTGTTCTCAAGGATGAGGAAACTGGTGCATGGTATCAACACAAAGGAAGAGATTTCAAGGTTCCTCTGGTTAATTACCTTAAGGAGGATGCTAATATAATTGGACCTAAAAAGGGTTTTAGTTTGTGGCCAGGGGCCCTGGGGCAGATATCTAACATTCTGCTCAAGTCAGATGCAACACATGACAAAGTTCAAGATGGCAACACAGGATCCAGAAATACAAAAGTGGAAAATAGTCAACTAGAAGGTTTCTATGTAGAGCTGCCTATTACCAAGGAAATTATTGTCAATAACTCTATTAGTGTCTCCATTAGGAAGTGTTCTGAAACAGCTAAGAATAATTTATATTTAGAAACAGATATACCTGGAGATATTCTCCTTCATTGGGGGGTTTGTAGGGATGATTTGAGGTGGTGGGAAATTCCACCTACTCCTCATCCACCAGAAACAATAGCATTTAAGGACAGAGCTTTGAGAACTAAATTACAGTCAAGAGACAATGGAGTGGGAAGTTCAGTACAACTCTCTTTGGGAGAAGAATTTTCTGGATTTCTTTTTGTTTTTAAGCTAAATGATGGTGCTTGGATAAATGATATGGGAGATGACTTTTATATCCCTCTCCCAAGATCTAGTAGCTTAATTATTGACAACAGGGACAACCAATTTGAAGGTGTACAGAGGGAAGTAACTGAAGTCACTGAAGAGGCAGGTCAAGATGAATCTATATCTGCATTTACCGATGAAATAATCAGTGAAATAAGGCATTTGGTGACAGATATTTCCTCTGAGAAGAATCGAACGACAAAATCCAAAGAAGCACAAGAAACCATTCTTCAGGAAATTGAAAAGCTAGCAGCTGAGGCCTACAGCATCTTTAGAAATTCAGTTCCAACTTTCTCAGAGGAAACTATTATGGAATCTGAGACTGCTGTTGAATCCAAAACAGTAATATTTCCTGAATTGCCTCCGCAAATATCCTCCGGAACAGGCACCGGGTACGAAATACTATGCCAAGGGTTTAATTGGGAATCTCATAAATCTGGAAGATGGTACATGGAGCTTAAAGAGAAAGCTGCAGAATTGGCATCATTTGGCTTTACTGTGATATGGTTACCACCACCGACAGAGTCTGTTTCTCCTGAAGGATATATGCCAAAGGATTTATATAATTTAAATTCTAGATATGGAACTGTTGATCAACTGAAGGATGTGGTGAAAAGTTTTCATGAAGTTGGAATCAAAGTGCTTGGAGATGTTGTTTTAAATCACCGCTGTGCTCACTATAAGAATCAGAATGGTATTTGGAACTTATTTGGAGGTCGTCTCGACTGGGATGATCGTGCAATTGTAGCTGATGATCCACATTTTCAGGGGAGGGGCAATAAGAGTAGCGGAGACAATTTTCATGCTGCTCCAAACATTGATCACTCCCAGGAATTTGTGAGAAAGGATCTTAAAGAATGGTTATTGTGGTTGAGGGAAGAAATTGGGTATGATGGGTGGCGCCTCGACTTTGTCAGAGGATTTTGGGGTGGTTATGTAAAGGACTACCTGGAAGCAAGTGAACCATACTTTGCTGTTGGAGAGTATTGGGATTCTCTTAGTTATACATATGGTGAAATGGATCATAATCAAGATGCCCATAGGCAGAGGATCGTGGACTGGATCAATGCTACTGGTGGTACTGCTGGTGCATTTGATGTTACAACCAAAGGGATTCTTCACTCTGCTTTGGAAAGATGTGAATACTGGCGCTTGTCAGATCAGAAGGGAAAGCCCCCTGGTGTTCTTGGGTGGTGGCCATCTCGTGCTGTTACTTTTATAGAAAATCATGATACTGGTTCTACCCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGCAAGGATATGCTTACACTCTTACTCACCCAGGAACTCCATCAGTGTTCTTTGACCATCTTTTTTCTCACTATAAAACTGAAATATCAACACTTCTCTCTATCAGGAAGCGGAACAAGATCCAGTGCAGGAGTACAGTTAAAATTTGCAAGGCAGAAAGGGATGTTTATGCAGCTGTGATAGATGAAAAAGTTGCTATGAAGATTGGACCTGGTCAGTTTGAACCACCCAGTGGATCCCAAAAATGGTCCTCAGTTTTGGAGGGAAGAGACTATAAGATTTGGGAGGCATCGTAA 2781 0.415 MSISTTLSFDPLFSFNHCVNREREPSIHCSKPKLFSLTSSSTLTLFNSNNNNNCTYNYASCKPHRFHTPKFESFATNTDTLESLQSSDVLFDRSFPINRTELVEGKIFVRLDHGKDLGNWELTVACNLTGKWILHWGVSRVDDVGSEWDQPPRDMIPPGSIPIKDYAIETPMQKSLSSAEGDALHEVKIDLKPNNDISAINFVLKDEETGAWYQHKGRDFKVPLVNYLKEDANIIGPKKGFSLWPGALGQISNILLKSDATHDKVQDGNTGSRNTKVENSQLEGFYVELPITKEIIVNNSISVSIRKCSETAKNNLYLETDIPGDILLHWGVCRDDLRWWEIPPTPHPPETIAFKDRALRTKLQSRDNGVGSSVQLSLGEEFSGFLFVFKLNDGAWINDMGDDFYIPLPRSSSLIIDNRDNQFEGVQREVTEVTEEAGQDESISAFTDEIISEIRHLVTDISSEKNRTTKSKEAQETILQEIEKLAAEAYSIFRNSVPTFSEETIMESETAVESKTVIFPELPPQISSGTGTGYEILCQGFNWESHKSGRWYMELKEKAAELASFGFTVIWLPPPTESVSPEGYMPKDLYNLNSRYGTVDQLKDVVKSFHEVGIKVLGDVVLNHRCAHYKNQNGIWNLFGGRLDWDDRAIVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRKDLKEWLLWLREEIGYDGWRLDFVRGFWGGYVKDYLEASEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIVDWINATGGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYTLTHPGTPSVFFDHLFSHYKTEISTLLSIRKRNKIQCRSTVKICKAERDVYAAVIDEKVAMKIGPGQFEPPSGSQKWSSVLEGRDYKIWEAS 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02658 926 CDD AmyAc_arch_bac_plant_AmyA 536 875 - -
Phco8g02658 926 SUPERFAMILY (Trans)glycosidases 533 852 IPR017853 -
Phco8g02658 926 SMART aamy 535 864 IPR006047 GO:0005975
Phco8g02658 926 Pfam Alpha amylase, catalytic domain 562 814 IPR006047 GO:0005975
Phco8g02658 926 Gene3D - 869 925 IPR013780 -
Phco8g02658 926 SUPERFAMILY Glycosyl hydrolase domain 869 924 - -
Phco8g02658 926 PANTHER ALPHA-AMYLASE 504 925 - -
Phco8g02658 926 Gene3D Glycosidases 535 868 - -
Phco8g02658 926 Pfam Alpha-amylase C-terminal beta-sheet domain 866 924 IPR012850 GO:0004556|GO:0005509|GO:0005975
Phco8g02658 926 SMART alpha-amyl_c2 865 925 IPR012850 GO:0004556|GO:0005509|GO:0005975
Phco8g02658 926 PRINTS Alpha-amylase signature 699 710 IPR006046 GO:0004556|GO:0005975|GO:0043169
Phco8g02658 926 PRINTS Alpha-amylase signature 613 624 IPR006046 GO:0004556|GO:0005975|GO:0043169
Phco8g02658 926 PRINTS Alpha-amylase signature 803 815 IPR006046 GO:0004556|GO:0005975|GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02658 Phco-Chr8 38861334 38873696 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02658 8 38861334 38873696 Phco8g02658 8 38861334 38873696 ECH