Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02166 ATGCAATCCTCGCTCTCACTCTCGTTCTCCGCCACCTCCTCCTCCGCCGCCGCCACGGTCTCCAGATCACGCCACTCCTTCCACGTCCCCGAGGCCACGCCTCTCAATCTCCGCTTCTGTGGCTTGCGGCGTGAGGCTTTTGATTCAGGTCTCGCTGCTTCTCTCAACCGCCACCACTCCCACCTCCCTCGCCGCCCTCACTCCGCCGCAATTTCTGCCGCGCTCTCCGCCAATGGCAGCCCTCCCAAATCATTCGACTACGATTTGCTCATTATCGGCGCTGGCGTTGGCGGCCACGGCGCCGCGCTTCATGCCGTCGAGAAGGGTTTGAAAACCGCGATCGTGGAAGGAGATGTGGTGGGAGGGACATGTGTGAACAGAGGCTGCGTTCCTTCGAAAGCTCTTTTGGCAGTGAGTGGTCGTATGCGAGAACTAAAGAGCGACCATCACTTGAAGTCCTTTGGCTTACAGGTATCTGCGGCTGGGTATGACAGACAAGGAGTCGCTGATCATGCTAATAATCTTGCTTCGAAAATTCGTAATAATTTGACCAACTCAATGAAAGCGCTTGGAGTAGACATACTTACTGGTTTTGGAACTATATTGGGTCCTCAAAAGGTGAAAGTTGGCTCTTCAAACAAAATAGTAACTGCTAAAGATATCATCATTGCTACTGGTTCTGTTCCTTTTGTACCAAAGGGCATTGAAGTTGATGGGAAGACTGTGATTACCAGTGACCATGCACTCAAACTGGAGTCTGTTCCTGATTGGATAGCAATTGTAGGAAGTGGGTATATTGGCCTTGAATTCAGTGATGTCTATACTGCACTTGGAAGTGAGGTTACTTTTGTAGAGGCTTTGGACCAACTTATGCCCGGATTTGATCCTGAAATTAGTAAGTTGGCTCAAAGGGTTCTTATAAATCCCCGTAATATTGATTATCATACTGGAGTTTTCGCCACCAAGATAACACCTGCAAGGGATGGAAAACCTGTCTTGATTGAACTTATTGATGCAAAAACTAAGGAGCCAAAGGACATTTTGGAGGTGGATGCTGCACTAATAGCAACTGGAAGGGCTCCATTCACACAAAATCTCGGATTGGAGAATATTGATGTTGTAACACAGCGTGGCTTTGTTCCTGTGGATGAGCGCATGCGTGTAATTGATGCAAATGGCAAACTGGTGCCACATTTATTCTGTATTGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGTGCCCAAGGAATTTCAGTGGTTGAACAAGTTAGTGGAAGAGATAATGTGCTGAATCATTTAAGCATCCCAGCTGCTTGTTTCACTCATCCAGAAATCAGCATGGTTGGATTAACAGAGCCTCAAGCCAGGGAAAAAGGTGAAAAAGAGGGGTTTGAAGTAAGTGTTGCCAAGACAAGTTTTAAAGCAAACACAAAGGCCCTAGCAGAAAACGAAGGAGAGGGACTTGCCAAGTTGATATACAGGCCTGACAATGGAGAGATACTGGGAGTTCATATTTTTGGTTTGCATGCAGCAGATCTTATCCATGAAGCATCCAATGCTATAGCATTAGGGACACGTATTCAGGAAATAAAATTTGCAGTTCATGCACATCCAACCTTGTCCGAGGTTCTTGATGAACTATTCAAATCTGCAAAGGTTAAAGCACAAGCTTCTAGCCCAGTAAGTGAACAAGTTGCAGTCTAA 1713 0.467 MQSSLSLSFSATSSSAAATVSRSRHSFHVPEATPLNLRFCGLRREAFDSGLAASLNRHHSHLPRRPHSAAISAALSANGSPPKSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELKSDHHLKSFGLQVSAAGYDRQGVADHANNLASKIRNNLTNSMKALGVDILTGFGTILGPQKVKVGSSNKIVTAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQLMPGFDPEISKLAQRVLINPRNIDYHTGVFATKITPARDGKPVLIELIDAKTKEPKDILEVDAALIATGRAPFTQNLGLENIDVVTQRGFVPVDERMRVIDANGKLVPHLFCIGDANGKMMLAHAASAQGISVVEQVSGRDNVLNHLSIPAACFTHPEISMVGLTEPQAREKGEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQEIKFAVHAHPTLSEVLDELFKSAKVKAQASSPVSEQVAV 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02166 570 Gene3D - 230 357 IPR036188 -
Phco8g02166 570 FunFam Putative dihydrolipoyl dehydrogenase 230 357 - -
Phco8g02166 570 PRINTS Pyridine nucleotide disulphide reductase class-I signature 351 365 - -
Phco8g02166 570 PRINTS Pyridine nucleotide disulphide reductase class-I signature 88 110 - -
Phco8g02166 570 PRINTS Pyridine nucleotide disulphide reductase class-I signature 120 135 - -
Phco8g02166 570 PRINTS Pyridine nucleotide disulphide reductase class-I signature 434 455 - -
Phco8g02166 570 PRINTS Pyridine nucleotide disulphide reductase class-I signature 525 545 - -
Phco8g02166 570 PRINTS Pyridine nucleotide disulphide reductase class-I signature 257 282 - -
Phco8g02166 570 PRINTS Pyridine nucleotide disulphide reductase class-I signature 399 406 - -
Phco8g02166 570 PRINTS Pyridine nucleotide disulphide reductase class-I signature 221 230 - -
Phco8g02166 570 PRINTS Pyridine nucleotide disulphide reductase class-I signature 503 518 - -
Phco8g02166 570 Gene3D - 87 420 IPR036188 -
Phco8g02166 570 Pfam Pyridine nucleotide-disulphide oxidoreductase 87 419 IPR023753 GO:0016491
Phco8g02166 570 PRINTS FAD-dependent pyridine nucleotide reductase signature 89 108 - -
Phco8g02166 570 PRINTS FAD-dependent pyridine nucleotide reductase signature 384 406 - -
Phco8g02166 570 PRINTS FAD-dependent pyridine nucleotide reductase signature 350 366 - -
Phco8g02166 570 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Phco8g02166 570 PRINTS FAD-dependent pyridine nucleotide reductase signature 257 275 - -
Phco8g02166 570 FunFam Dihydrolipoyl dehydrogenase 437 561 - -
Phco8g02166 570 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 121 131 IPR012999 GO:0016668
Phco8g02166 570 PIRSF Hg-II_reductase_MerA 45 553 IPR001100 GO:0016491
Phco8g02166 570 NCBIfam dihydrolipoyl dehydrogenase 87 557 IPR006258 GO:0004148|GO:0050660
Phco8g02166 570 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 438 549 IPR004099 -
Phco8g02166 570 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 437 551 IPR016156 GO:0016491|GO:0050660
Phco8g02166 570 Gene3D - 437 561 IPR016156 GO:0016491|GO:0050660
Phco8g02166 570 PANTHER DISULFIDE OXIDOREDUCTASE 84 554 - -
Phco8g02166 570 SUPERFAMILY FAD/NAD(P)-binding domain 74 429 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02166 Phco-Chr8 23221320 23228248 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02166 8 23221320 23228248 Phco8g02166 8 23221320 23228248 ECH
Phco8g02166 8 23221320 23228248 Phco7g03005 7 48744138 48752757 PCT