Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02163 ATGAGTACACTGAAATTTTGCCGCAGATGCAAAAATGTTCTGTACCCAACAGAGGACAAGGAGAACAAGGTTCTTCTCCACGCTTGCCGCTACTGCAATCATGAGGAGATTGCAGATAATAATGTTGTCTATAGAAATAAGATACATCATTCTGTTCAAAGGCGCACTCGAGAGCTGGAAAATGTAGCTGCAGATCCAACACTCCCTCGCACCAAGTCTGTTCGCTGCTCTCAATGCAACCATGGAGAGGCTGTTTTTTTCAAGGCAACGGCCAAAGGGGAAGAAGGCTCGGCACTCAATTTTGTTTGCTGCAGCCCAACTTGTGGCAACCGTTGGAGAGACTAG 345 0.4667 MSTLKFCRRCKNVLYPTEDKENKVLLHACRYCNHEEIADNNVVYRNKIHHSVQRRTRELENVAADPTLPRTKSVRCSQCNHGEAVFFKATAKGEEGSALNFVCCSPTCGNRWRD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02163 114 Gene3D - 47 114 - -
Phco8g02163 114 SUPERFAMILY Zinc beta-ribbon 55 114 - -
Phco8g02163 114 CDD Zn-ribbon_RPB9 64 113 IPR034012 GO:0006379
Phco8g02163 114 FunFam DNA-directed RNA polymerase subunit 47 114 - -
Phco8g02163 114 FunFam DNA-directed RNA polymerase II subunit RPB9 1 46 - -
Phco8g02163 114 PANTHER DNA-DIRECTED RNA POLYMERASE 1 113 IPR012164 GO:0003899|GO:0006351
Phco8g02163 114 SMART rpol9cneu 5 58 IPR001529 GO:0006351
Phco8g02163 114 SUPERFAMILY Zinc beta-ribbon 1 48 - -
Phco8g02163 114 Gene3D - 1 46 - -
Phco8g02163 114 Pfam Transcription factor S-II (TFIIS) 75 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Phco8g02163 114 Pfam RNA polymerases M/15 Kd subunit 4 36 IPR001529 GO:0006351
Phco8g02163 114 ProSiteProfiles Zinc finger TFIIS-type profile. 72 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02163 Phco-Chr8 23183261 23186050 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02163 8 23183261 23186050 Phco8g02163 8 23183261 23186050 ECH
Phco8g02163 8 23183261 23186050 Phco7g03018 7 48832406 48834422 PCT