Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02118 ATGGCCACAAGCGTTGAAACGAGCCGAGATACGAAAGGGCATCGTAGCCAGAAAAAGGTGTCACTCCACCGGAGCAACGCAAAGGAACAACAAACTCGCACGCACGCACTTCTCTGTTCGCTTTCTCCCGCTAGGGTTTCTGTTAGGGTTTCGCTCTGTTACGCCAAGCTGGAGAGGCACAGAGGAGACCGTTACAACAACAACAATGATTTCCACAACGACAATAACTATCGTCACTCTAACAGGGGGCGCTTCTCCGATTCTCCCATGAACTACCACAACACGCGCCGGAGCCCTTCCGGCTTCCGCTCTGGCGCCGCTCCTAACCACCGCTCCTTCGACAGTCCTCCGCGTCGCTCTCCCGGCAGGGGAGGAGGATTCCGGCCGATGGGAGGGGAAGGTCCTGGGGAATTCGGATTCAACGGCCACCAGCCACCACCGCCGCTGGTTGGCCAAAAACGAGGGTTTCCTGTCTCCGGACGCGGTGGCGGTTCGCCCGATCGTTTAGATGGTGGAAATTTTGCTAAACTTTTTGTTGGATCTGTTCCCCGAACAGCTGTTGAAGATGATATTCGCCCGCTGTTTGAGGAACATGGGAATGTGATTGAGGTTGCCCTCATCAAAGATAGAAAGACAGGACAACATCAAGGTTGTTGTTTCATAAAATATTCTACTGCAGAAGAAGCTGATCAGGCAATTAGAGCACTGCATAATCAACATACTCTTCCTGGAGGTGTTGGTCCAATACAAGTGCGATATGCTGATGGTGAACGGGAACGCCTTGGTGCAGTTGAGTACAAGTTATTTGTGGGCTCTCTGAACAAACAGGCTCCCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCGAGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTCAAATACTCACACAGAGATATGGCTCTGGCAGCTATTAATGCACTTGATGGAGTCTACACAATGAGAGGTTGTGAGCAACCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCAGGCCTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCTCAAGACTTCCATCCAATATTACTGATCCTATGGGTGATCGAATGCCTCCCCCTAATGCTTGGAGACCAATGCATCCCCCAAATATGGGGCCATCCACTAATGCTGGTCTTCATGGCATGGGGCCACCAATGCTTCCAAGATCTGGTGAAATGGCATTGCCTACAAATGCAGGCGGTCCTATGACTGGCTTGGGAGGCCCCATGGATAGTCGTTTTCAAGTTCAGTCTATGCCATCGATGTCACAACAGAATTTCAATCAGCCTATGCCACAAATTCCGCCACTCAATCAACAAATATCACCCTTACAGAAGAATATCCAATCATCCCAGGAACTGCCACCATCCAATCAGTTGTACCCTCAAGCACCAGTTCCCTATCCACAAACATCTCTTAGACCACATGGCCAGCCACTTCTTCCTCCTTCTGCTGGTCCTCTTCAATCTCAGCAGATACATGGAGTAAGTGGACAGTTTCCAACTTCTCAACCGCAAACTCAACAGAGTGCTTTGTCTGCTGCATTTCCTCAGACTCCTCTTGACGCCAGCATGCATTCTAATACTGCATTAGCTACAAATCAACAGCAAGTTCCTCCCTCCATGGCACAGCAGCCTCTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTGTCGCAACAGACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAGCCTTCTAGTCAAGCATTAACATTGCAGCAAAATGCAGAAGCTACTAAAAAGCAGTCTCAATGGGCTGGGACTGTAGCACAAACAGTGGCCAGCACTCATGCAACTGCTCCTGCTGCAGACACCCCTTCATCCAAACTTGCCACTTCGGCCTTACAAGCAATAAACCATAACTCGGCTCTTGCCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGCGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACGTTATATGAACAGCAACAGCAAAGGGTATCTGTTCAGCAGTCTCAAACTCAGTCACAGCCTTCAGTGCTACCTGCCCAGCAAATTCCACAGTTCCAACAGGTTCAGCCTCAGAGTCATCTCCAAGGACAAGTTCTTCACCAGCAACAAGTACAACAGCCTCCTTTGTCCTCTTCATTCCAGGCATATGGCGTTACAGGCCCTCAAAATGTCCAGGAAGTTGGTTATAAACAGTTGCAGCCAACTGTTATTTCAGCTGGTGATCCAGGACGTTACTCACAGGGTGTTCATTCTACACACGAATTGATGTGGAAAAATAAGCCTTCAGGAGTTTGA 2466 0.4866 MATSVETSRDTKGHRSQKKVSLHRSNAKEQQTRTHALLCSLSPARVSVRVSLCYAKLERHRGDRYNNNNDFHNDNNYRHSNRGRFSDSPMNYHNTRRSPSGFRSGAAPNHRSFDSPPRRSPGRGGGFRPMGGEGPGEFGFNGHQPPPPLVGQKRGFPVSGRGGGSPDRLDGGNFAKLFVGSVPRTAVEDDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYSTAEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALDGVYTMRGCEQPLIVRFADPKRPRQGDSRGQAFGGPGFGPRFDAPGSRLPSNITDPMGDRMPPPNAWRPMHPPNMGPSTNAGLHGMGPPMLPRSGEMALPTNAGGPMTGLGGPMDSRFQVQSMPSMSQQNFNQPMPQIPPLNQQISPLQKNIQSSQELPPSNQLYPQAPVPYPQTSLRPHGQPLLPPSAGPLQSQQIHGVSGQFPTSQPQTQQSALSAAFPQTPLDASMHSNTALATNQQQVPPSMAQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTLQQNAEATKKQSQWAGTVAQTVASTHATAPAADTPSSKLATSALQAINHNSALAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLYEQQQQRVSVQQSQTQSQPSVLPAQQIPQFQQVQPQSHLQGQVLHQQQVQQPPLSSSFQAYGVTGPQNVQEVGYKQLQPTVISAGDPGRYSQGVHSTHELMWKNKPSGV 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02118 821 ProSiteProfiles WW/rsp5/WWP domain profile. 682 709 IPR001202 GO:0005515
Phco8g02118 821 SMART rrm1_1 267 342 IPR000504 GO:0003723
Phco8g02118 821 SMART rrm1_1 176 252 IPR000504 GO:0003723
Phco8g02118 821 MobiDBLite consensus disorder prediction 346 543 - -
Phco8g02118 821 FunFam flowering time control protein FCA isoform X2 169 261 - -
Phco8g02118 821 Pfam WW domain 681 707 IPR001202 GO:0005515
Phco8g02118 821 MobiDBLite consensus disorder prediction 564 596 - -
Phco8g02118 821 FunFam Flowering time control protein FCA 262 352 - -
Phco8g02118 821 MobiDBLite consensus disorder prediction 62 169 - -
Phco8g02118 821 SUPERFAMILY RNA-binding domain, RBD 266 368 IPR035979 GO:0003676
Phco8g02118 821 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 256 IPR000504 GO:0003723
Phco8g02118 821 SMART ww_5 677 709 IPR001202 GO:0005515
Phco8g02118 821 SUPERFAMILY WW domain 681 714 IPR036020 GO:0005515
Phco8g02118 821 CDD WW 679 709 IPR001202 GO:0005515
Phco8g02118 821 MobiDBLite consensus disorder prediction 82 102 - -
Phco8g02118 821 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 240 IPR000504 GO:0003723
Phco8g02118 821 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 336 IPR000504 GO:0003723
Phco8g02118 821 Gene3D - 263 354 IPR012677 -
Phco8g02118 821 PANTHER RNA BINDING PROTEIN 98 604 - -
Phco8g02118 821 SUPERFAMILY RNA-binding domain, RBD 160 260 IPR035979 GO:0003676
Phco8g02118 821 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 346 IPR000504 GO:0003723
Phco8g02118 821 MobiDBLite consensus disorder prediction 444 489 - -
Phco8g02118 821 MobiDBLite consensus disorder prediction 1 31 - -
Phco8g02118 821 ProSitePatterns WW/rsp5/WWP domain signature. 682 707 IPR001202 GO:0005515
Phco8g02118 821 Gene3D - 170 262 IPR012677 -
Phco8g02118 821 Gene3D - 675 725 - -
Phco8g02118 821 MobiDBLite consensus disorder prediction 514 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02118 Phco-Chr8 22606063 22621335 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02118 8 22606063 22621335 Phco8g02118 8 22606063 22621335 ECH