Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01883 ATGGAGAATTTACCAAGGGGGATTTTTTATACCCTGTTGTTATTTTTGTGGGTTTGTGCAGTCACAGCCTCTGTGACTTATGATCATAAAGCGATTCTTGTTAATGGACAGAGAAGAATTTTGATCTCTGGCTCCATCCACTACCCAAGAAGCACGCCTGAGATGTGGCCGGACCTTATTCAAAAGGCCAAAGATGGAGGCTTAGACGTTATTCAAACCTATGTGTTTTGGAATGGACATGAACCATCTCCTGGAAAGTATTATTTCGAGGATAGATACGACTTGGTTAAGTTCATCAAGGTGGTGCAGCAGGCTGGTCTCTATCTTCATCTCCGTATTGGTCCCTTCGTGTGTGCTGAGTGGAACTTTGGGGGGTTTCCTGTTTGGCTCAAGTATGTTCCGGGTATTGCTTTCAGAACAGACAATGAACCTTTTAAGGCGGCAATGCAAAATTTTACTAAGAAGATAGTCAGCATGATGAAGGCGGAGAAATTGTTCCAGACTGAGGGAGGTCCAATAATTATGTCACAGATAGAAAACGAATTTGGACCAGTGGAATGGGAAATTGGTGCTCCTGGAAAAGCTTATGCCCAATGGGCTGCTCAAATGGCTGTGGGTTTAGATACTGGTGTCCCCTGGATTATGTGCAAGCAAGAAGATGCTCCGGATCCCGTTATTAACACGTGTAATGGATACTACTGTGAAAACTTCACTCCTAACAAGGACTACAAACCCAAAATGTGGACGGAGAACTGGAGTGGCTGGTACACTGAGTTTGGTGGCGCAGTCCCTCGTAGACCTGCAGAAGACATGGCTTTCTCAGTTGCAAGATTCGTACAGAATGGCGGTTCATTTGTTAATTACTATATGTTCCATGGGGGAACTAACTTTGATCGGACATCAGGTGGCCCCTTCATTGCCACCAGCTATGACTATGATGGTCTCCTTGATGAATACGGACTTTTAAATGAGCCAAAATGGGGACATTTGAGAGATTTGCATAAAGCAATAAAGATATGTGAGCCAGCTTTAGTGTCCGTGGATCCCACAGTGACATGGCCTGGGCAAAACCTTGAGGTACATGTGTTCAAGACTTCTGGTGCTTGTGCTGCATTCCTAGCAAATTATGACACCAAATCTTCCGCAACAGTTACATTTGGAAATGGACAATATGACCTACCACCTTGGTCTATCAGCATCCTTCCTGATTGCAAAACTGAAGTTTTCAACACTGCAAGAGTTGGTGCTCAAAGCTCTCTGATGAAGATGACTGCTGTGAACACTGCATTTGATTGGCAGTCGTACAATGAAGAGCCTGCATCGTCCAGTGAAGATGATCCCTTAATAGCATATGCACTCTGGGAGCAGATTAATATCACCCGAGATTCTACAGATTATTTGTGGTATATGACAGATGTGAACATTGATGCAAATGAAGGTTTTATAAAGAGTGGACAATCTCCTGTTTTCACCGTGATGTCAGCTGGCCATGCTTTGCATGTTTTCATTAATGGTCAACTTTCAGGTACTGTTTATGGGGGATTGGAGTTCCCTAAATTAACATTTAGTGATAGTGTTAAGCTGAGGGTTGGCAATAATAAGATATCTTTACTAAGTATTGCCGTGGGTCTCCCGAATGTTGGGACACACTTTGAGACATGGAATGCTGGGGTGTTAGGCCCAGTCACACTTAATGGTCTAAATGAGGGGACTAGAGACTTGTCTAAACAGAAATGGTCGTACAAGATTGGTCTCAAGGGAGAAGCCTTAAACCTTAACACCGTAAGTGGGAGTAGTTCAGTTGAATGGGTACAAGGATCACTATTGGCTAAAAAACAGCCTTTGACATGGTACAAGACAACTTTTAGCACACCAGTAGGCAATGATCCATTAGCTCTAGACATGATTAGCATGGGAAAGGGCCAAGTATGGATAAATGGTCGAAGCATTGGACGCCATTGGCCTGGATATATAGCACGCGGTCATTGTGGGGAATGTTACTACGCTGGAACTTACAATGATAAAAAGTGCCAGACAAATTGTGGAGAACCCTCCCAGAGATGGTACCATATTCCTCGGTCGTGGCTGAACCCAAGTGGGAACTATCTGGTTGTGTTGGAAGAATGGGGAGGAGACCCTAATGGAATTTCTTTGGTGAAAAGAACAACAGCAAGTGTTTGTGCTGACATATATGAAGGACAACCAACTCTTAGAAACAGGCATATGCTAGACACTGGCAAAATTAATAGACCCAAGGCTCACTTGTGGTGTCCACCTGGGCTAAAGATCTCCCAGATTAAATTTGCTAGTTATGGACTGCCACAGGGAACTTGTGGAAACTATAGAGAGGGAAGCTGTCATGCTCACAGATCATATGATGCTCCTGAAAAGAACTGCATTGGCAAGCAATCTTGCTCGGTGACTGTAGCTCCTGAAGTTTTTGGGGGAGATCCATGTCCGGGAACTGCAAAGAAGCTCTCACTTGAGGCACTATGCAGCTAG 2502 0.4404 MENLPRGIFYTLLLFLWVCAVTASVTYDHKAILVNGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVKFIKVVQQAGLYLHLRIGPFVCAEWNFGGFPVWLKYVPGIAFRTDNEPFKAAMQNFTKKIVSMMKAEKLFQTEGGPIIMSQIENEFGPVEWEIGAPGKAYAQWAAQMAVGLDTGVPWIMCKQEDAPDPVINTCNGYYCENFTPNKDYKPKMWTENWSGWYTEFGGAVPRRPAEDMAFSVARFVQNGGSFVNYYMFHGGTNFDRTSGGPFIATSYDYDGLLDEYGLLNEPKWGHLRDLHKAIKICEPALVSVDPTVTWPGQNLEVHVFKTSGACAAFLANYDTKSSATVTFGNGQYDLPPWSISILPDCKTEVFNTARVGAQSSLMKMTAVNTAFDWQSYNEEPASSSEDDPLIAYALWEQINITRDSTDYLWYMTDVNIDANEGFIKSGQSPVFTVMSAGHALHVFINGQLSGTVYGGLEFPKLTFSDSVKLRVGNNKISLLSIAVGLPNVGTHFETWNAGVLGPVTLNGLNEGTRDLSKQKWSYKIGLKGEALNLNTVSGSSSVEWVQGSLLAKKQPLTWYKTTFSTPVGNDPLALDMISMGKGQVWINGRSIGRHWPGYIARGHCGECYYAGTYNDKKCQTNCGEPSQRWYHIPRSWLNPSGNYLVVLEEWGGDPNGISLVKRTTASVCADIYEGQPTLRNRHMLDTGKINRPKAHLWCPPGLKISQIKFASYGLPQGTCGNYREGSCHAHRSYDAPEKNCIGKQSCSVTVAPEVFGGDPCPGTAKKLSLEALCS 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01883 833 SUPERFAMILY (Trans)glycosidases 24 341 IPR017853 -
Phco8g01883 833 ProSiteProfiles SUEL-type lectin domain profile. 747 833 IPR000922 GO:0030246
Phco8g01883 833 CDD Gal_Rha_Lectin_BGal 750 832 - -
Phco8g01883 833 Pfam Glycosyl hydrolases family 35 32 336 IPR031330 -
Phco8g01883 833 FunFam Beta-galactosidase 744 833 - -
Phco8g01883 833 SUPERFAMILY Galactose-binding domain-like 578 739 IPR008979 -
Phco8g01883 833 FunFam Beta-galactosidase 441 578 - -
Phco8g01883 833 FunFam Beta-galactosidase 20 340 - -
Phco8g01883 833 Gene3D - 432 576 - -
Phco8g01883 833 Pfam Beta-sandwich domain in beta galactosidase 344 414 IPR041392 -
Phco8g01883 833 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Phco8g01883 833 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Phco8g01883 833 PRINTS Glycosyl hydrolase family 35 signature 284 299 IPR001944 GO:0004553|GO:0005975
Phco8g01883 833 PRINTS Glycosyl hydrolase family 35 signature 613 627 IPR001944 GO:0004553|GO:0005975
Phco8g01883 833 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Phco8g01883 833 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Phco8g01883 833 PRINTS Glycosyl hydrolase family 35 signature 247 262 IPR001944 GO:0004553|GO:0005975
Phco8g01883 833 PRINTS Glycosyl hydrolase family 35 signature 640 656 IPR001944 GO:0004553|GO:0005975
Phco8g01883 833 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Phco8g01883 833 PANTHER BETA-GALACTOSIDASE RELATED 19 737 IPR001944 GO:0004553|GO:0005975
Phco8g01883 833 Gene3D - 581 727 - -
Phco8g01883 833 FunFam Beta-galactosidase 586 727 - -
Phco8g01883 833 SUPERFAMILY Galactose-binding domain-like 398 568 IPR008979 -
Phco8g01883 833 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Phco8g01883 833 FunFam Beta-galactosidase 289 416 - -
Phco8g01883 833 Gene3D Glycosidases 18 341 - -
Phco8g01883 833 Gene3D - 745 833 IPR043159 -
Phco8g01883 833 Pfam Galactose binding lectin domain 755 832 IPR000922 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01883 Phco-Chr8 19846774 19851942 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01883 8 19846774 19851942 Phco8g01883 8 19846774 19851942 ECH
Phco8g01883 8 19846774 19851942 Phco7g02741 7 46418035 46423390 PCT