Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01494 ATGAGCTGGCGCAGGGTGTTGAACTCAGCACAGGCCCTGGCTGCGCACACCTTCCTCTTGTGCTTCACTCTCTTCCTCGTTCTCAAGCTCGATCACAATCTCCCTTGTTCTTGGTGGGTAATATTTTTACCTCTATGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCACCATCTGCTCCACGTAATCGAAATTGGGCACCATGCCATGCCGTCGTTGCAACGCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGATCTTGGCTATGCAGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGATGTGTAAGGCTCTAATGCCAGGGGATGAAGAAAACATGAGTGACGAGGCAATATGGGAAACTCTTCCTCACTTTTGGGTTGCAATTTCTATGGTGTTCTTCATTGCTGCTACAGTCTTCACACTCCTAAAACTGAGCGGTGATGTAGGTGCTCTGGGCTGGTGGGACCTGTTTATTAATTTTGCTATCGCTGAATGCTTTTCTTTCCTTGTATGTACAAAGTGGTCCAATCCTGTAATTCATAGAAATTCAAGAGAAGCCAGTAGTTCATCTTCTACTACTATTAGATATCTTGACTGGAACAGTGGTTTAGTGGTTTCTACAGATGAAAATCTACTCCAGGGGAGAATCTGTAGCGTGCAAGACATAGGGGGACATTTCATGAAAGTACCACTTATTGTATTCCAGATTCTTCTCTGTATGCATCTAGAGGGAACACCTGCTTCTGCTGCATATATACCACTTCCAGTTCTTTTCTCTCCCCTTTTCCTACTACAAGGAGCTGGAGTACTGTTATCTGGATCTAAATTAGCGGAGAAACTTGTGCTTCTCCTACGAAGTGGAGCTGGAGGAGGAATTTATTTTAGATTTTCTTCAAGAGTTCATGATTGCTTGGGGTTCTTGCATCATGGTTCCAGATTATTAGGTTGGTGGTCAATTGACGAAGGGAGTCGGGAAGAACAAGCACGAATATACCATGAGGGAGCATCTGGGTATAATACGTTTTGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCAAGAAAGGAACTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAGACTGAAATTACAAAATTCAGCCAACAGGAGTATGAAAGACTTCAAAATGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTAACGTTGTATTGCTCCCATGTAGGCATCGCGTCCTTTGCAGCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGTCGTGACTCTATTGCTGAGCGTCTCCCTGTATATGATGTTTAG 1401 0.4297 MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHNLPCSWWVIFLPLWMFHGVVARGRFSLPAPSAPRNRNWAPCHAVVATPLLIAFELLLCIYLESLYDLGYAAVDLKIVFLPLLTFEIIILIDNFRMCKALMPGDEENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFSFLVCTKWSNPVIHRNSREASSSSSTTIRYLDWNSGLVVSTDENLLQGRICSVQDIGGHFMKVPLIVFQILLCMHLEGTPASAAYIPLPVLFSPLFLLQGAGVLLSGSKLAEKLVLLLRSGAGGGIYFRFSSRVHDCLGFLHHGSRLLGWWSIDEGSREEQARIYHEGASGYNTFCGYPPEIVKKMPRKELAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLCRICFEGEINVVLLPCRHRVLCSTCSEKCKKCPICRDSIAERLPVYDV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01494 466 ProSiteProfiles Zinc finger RING-type profile. 419 454 IPR001841 -
Phco8g01494 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 464 IPR013083 -
Phco8g01494 466 SMART ring_2 419 453 IPR001841 -
Phco8g01494 466 FunFam Kinesin-like protein KIN-7D, mitochondrial 396 464 - -
Phco8g01494 466 Pfam Zinc finger, C3HC4 type (RING finger) 416 458 - -
Phco8g01494 466 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 466 - -
Phco8g01494 466 SUPERFAMILY RING/U-box 410 461 - -
Phco8g01494 466 FunFam Baculoviral IAP repeat containing 7 428 464 - -
Phco8g01494 466 Pfam Transmembrane Fragile-X-F protein 28 291 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01494 Phco-Chr8 15376050 15383284 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01494 8 15376050 15383284 Phco8g01494 8 15376050 15383284 ECH