Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01473 ATGCAAAATATGACAATGGCAGAAGCAGAAGACAACGCTCAAGCCTCACCTATGGACGAAAAGAAGAACAAAAATCAGAAGAATAAGAAGAAGCGCGAGAAAAAACGACCTCGGGATAATGCTACCGAGGAGCGTCCAGAAGAAGAGGAGAATGGGAATGACATAGATAGCGATGGAGAATCCTCGAAGAATAAGAAGAAGAAAGTGGAAGGAGAAAGTGAAGTGGAAGAGAGAAAGGTGAAGAACAATGGTGGGTCTGGAATTATGAGCTCCGAGTCATTTGAATCTCTGGGATTGTCTGAACCTACTTATAAGGCCATCATGGATATGGGATTCCAGCACATGACTCAGATTCAAGCGAGAGCAATTCCACCTCTCTTGATTGGAAAAGATGTGCTTGGTGCCGCAAGAACCGGTTCTGGAAAAACTCTGGCCTTCTTAATTCCTGCAGTGGAGCTGTTGTACAATGTTAAGTTTACACCCCGTAATGGAGCTGGTGTTGTTGTTATATGCCCAACTAGAGAGCTTGCAATACAGACACATGCTGTGGCCAAGGAGCTTCTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGAGGTTCAACTAGAAAACTTGAAGCTGAACGCCTAGCTAAAGGGATAAATCTATTGGTAGGAACTCCTGGTCGTCTTCTAGATCATCTTCAAAACACAAAAGGATTCATATACAAAAACTTGAAGTGTCTCATGATTGATGAAGCTGACAGAATCTTAGAAGCAAACTTCGAGGAGGAAATGAAACAGATTATTAAGATCCTTCCAAAGAGTAGGCAAACAGCTTTATTTTCCGCTACCCAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCATTTCAGACGACTCCCATCTATATTGATGTGGATGATGGGAGAACCAAGGTCACAAACGAAGGGTTGCTTCAGGGTTATGTTGTTGTACCCTGTGCCAAGCGCTTTATTGTTCTCTATTCCTTTTTGAAGAGACACCAGTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGACATTCTTAATCTCGTTCAATTGAATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGACCAGGACAACAACCTTTTTTGATTTTTGCAAAGCAGGAAAGGGGATCTTGCTATGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAATACGATCCACCTGATGAACCGAAGGAATACATCCACAGGGTCGGTAGAACGGCTCGTGGCGAAGGTGGAAAAGGAAATGCTTTGCTTTTCCTAATTCCTGAAGAATTGCAATTTCTCCGCTACCTGAAGGCAGCTAAGGTCCCTGTTAAAGAGTATGCATATGATGAAAAGAAGGTGGCTAACGTACAATCTCACCTGGAGAATTTGGTTGTCAACAATTTTTATTTGAACAAGATGGCGAAAGAAGCTTATAGATCATACATATTAGCTTATAATTCACATTCCATGAAGGATATATTCAATGTTCACCGTCTTGATTTTCAGGCTGTTGCTTCTTCGTTTTGTTTCTCAAACCCACCAAACGTGACACTGAACATAAACAGCAGTAAGCAAAGGAATAAAATGCGTAAAGTTGATGGAAGTAGACACGGATTCAACGACAACAATCCTTATGGAAAGAGAAGTGCTGATGACAGGCGGCAGTTTGTGAGGCACTAG 1734 0.4193 MQNMTMAEAEDNAQASPMDEKKNKNQKNKKKREKKRPRDNATEERPEEEENGNDIDSDGESSKNKKKKVEGESEVEERKVKNNGGSGIMSSESFESLGLSEPTYKAIMDMGFQHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSTRKLEAERLAKGINLLVGTPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKSRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLVQLNCSSIHGKQKQQTRTTTFFDFCKAGKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVVNNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDFQAVASSFCFSNPPNVTLNINSSKQRNKMRKVDGSRHGFNDNNPYGKRSADDRRQFVRH 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01473 577 MobiDBLite consensus disorder prediction 542 577 - -
Phco8g01473 577 SMART DUF4217_3 473 536 IPR025313 -
Phco8g01473 577 Pfam Domain of unknown function (DUF4217) 474 534 IPR025313 -
Phco8g01473 577 Pfam Helicase conserved C-terminal domain 328 432 IPR001650 -
Phco8g01473 577 SMART helicmild6 352 433 IPR001650 -
Phco8g01473 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 300 IPR027417 -
Phco8g01473 577 CDD DEADc_DDX18 103 300 IPR044773 GO:0003724|GO:0005524
Phco8g01473 577 Gene3D - 41 302 IPR027417 -
Phco8g01473 577 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 92 120 IPR014014 GO:0003724
Phco8g01473 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 447 IPR027417 -
Phco8g01473 577 MobiDBLite consensus disorder prediction 56 81 - -
Phco8g01473 577 Pfam DEAD/DEAH box helicase 116 287 IPR011545 GO:0003676|GO:0005524
Phco8g01473 577 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 298 IPR014001 -
Phco8g01473 577 Gene3D - 313 553 IPR027417 -
Phco8g01473 577 PANTHER RNA HELICASE 32 477 - -
Phco8g01473 577 SMART ultradead3 111 316 IPR014001 -
Phco8g01473 577 CDD SF2_C_DEAD 313 443 - -
Phco8g01473 577 FunFam RNA helicase 309 539 - -
Phco8g01473 577 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 472 IPR001650 -
Phco8g01473 577 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 244 252 IPR000629 -
Phco8g01473 577 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01473 Phco-Chr8 15151874 15156546 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01473 8 15151874 15156546 Phco8g01473 8 15151874 15156546 ECH