Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01461 ATGGAAAACATAGACACCTCAAAACTTTCACACCAATCTCATAACCAAAACAAGAATCTTCCTTTGATGCCTATTGAAATAGACAAGTCCTATGAGAAGAGAGTCATGAAGATTCCAAAAGTAGGAAAGAAGATTGAGAAAAAGTTTCTTGGGGTTAGGCAAAGGCCTTCAGGAAGATGGATTGCTGAGATCAAGGAATCCTCACAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAAGCTGCCTTGGCTTATGACTGTGCTGCAAGGGTTCTTAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCCTAGAACCATGAACACTCGTGAAGAAGAATACAGCATTCTGGGCAAGAATCCAAGGTCTTACCAACTTCTTAAGCATGCAGTTATGAAGAACCACGCACTTTCAACATCTCTTTATTCCACATTCATGCCTTGGAAAAACCAGATCATGATGAGAGATGAACATGACACACTTGTTGAGGAAACTATAGTTTGTTCCATTCCTGAACAAGGCTCTGGCTGTTGTGGAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCTTTCAGTGCTTCTTCTCTTGATGAAACACCCTAA 630 0.4 MENIDTSKLSHQSHNQNKNLPLMPIEIDKSYEKRVMKIPKVGKKIEKKFLGVRQRPSGRWIAEIKESSQKLRLWLGTFDKAEEAALAYDCAARVLRGRNAKTNFPNPRTMNTREEEYSILGKNPRSYQLLKHAVMKNHALSTSLYSTFMPWKNQIMMRDEHDTLVEETIVCSIPEQGSGCCGISFGSSKVYSSVVVAPSFSASSLDETP 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01461 209 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Phco8g01461 209 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Phco8g01461 209 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 124 - -
Phco8g01461 209 FunFam ethylene-responsive transcription factor RAP2-11 47 106 - -
Phco8g01461 209 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Phco8g01461 209 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Phco8g01461 209 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Phco8g01461 209 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Phco8g01461 209 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Phco8g01461 209 CDD AP2 47 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01461 Phco-Chr8 15058510 15059139 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco8g01461 AP2 1.5e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01461 8 15058510 15059139 Phco8g01461 8 15058510 15059139 ECH