Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01454 ATGAAAAGGTTTTGGGATTCCGAACATCCCTTTCTCCGTCGTGGTTGCACTCAGTCACTCCGATATCAAAACGGCGCCATGCCTACCGTCAGCGTGGGGCGGGATCGCCTTTTTGCGGCTGTAGGAAGAACTTACACGCAAGAGGAATTCGAGGACTTGTGCTTCAGTTTCGGGATCGAGCTCGACGACGTCACGACGGAGAAGGCAATTGTAAGGAAAGAGAAGCATCTGGATGAAGAAGAAGCTGATGAGGACGAAGAAGTTATCTACAAGATTGAAGTTCCCGCCAATAGATATGACCTCCTGTGCCTTGAAGGGCTTGCTCAAGCTCTCCGAGTTTTTTGTGAGATCCAGGAGATCCCCACATATAGATTGTCTGACATTAGTAAGAATGCAATGCTGAAAATGCATGTGAAGCCCGAGACTTCTGTGGTTCGTCCATTTGTTGTGTGTGCTGTATTAAGAGGTGTAACTTTTGATAAAGCAAGATACAACAGCTTTATCGATCTCCAAGACAAGCTTCACCAAAACATATGTCGGCGAAGAACACTTGTTGCCATAGGAACCCATGATCTGGACAAATTGGAGGGTCCTTTCACATATGAGGCTTTGCCACCTTCAAGTATAACTTTTACACCACTAAAGCAGGAAAGGAACTTCAGGGCTGATGAGTTAATGGAGTTCTACAAATCAGATTTGAAACTGAAGAAATTCTTGCATATAATTGAGGATTCCCCTGTTTTCCCTGTATTATATGACAGTAAGAGAACTGTGTTATCTTTACCCCCAATTATTAATGGTGCTCACTCAGCCATCACTCTGGAGACAAAGAATGTATTTATTGAATGTACTGCTACTGATCTGACAAAGGCGAAGATTGTTTTAAATACAATGGTAACAGCCTTCTCAGAATATTGTGCAAACAAATTTGTCATTGAACCAGTTGAAGTGATTTCTTCTGATGGCAAGTCCAACATATACCCTGATTTATCTGTCTACAATATGGAGGTTTCTCTATCTTACATTACTGGATTGATTGGGGTATCATTGGAGGCAGAAGAGGTCACTAAGTTCTTAAATCGGATGCAATTGCATGCTAAGCAGTCTACATCTGCTAAAAAGCAGTGTAACTTAATAGTATCTGTACCTCCTACGAGAAGTGACGTTCTTCACCCATGTGATGTTATGGAGGATGTAGCAATTGCTTATGGATTCAATACTATTAAAGATAAGGCTGTAGCAGATAATAAGGGTTCAAAGAGGTTGGCTGCTTCCCTGACTCTACTTCCACTGAACGAGATAAGTGATCTTATCCGAAAAGAGGTTGCATTGATTGGGTTTACAGAGGTCTTGACATTTATACTCTGCTCTAAAAAGGAAAACTTTGCCATGCTTAACCGCAAAGATGATAAATCTAAAGCAGTTATCATTGGAAACCCCAGATCTTCAGACTTTGAGGCAGTGCGAACTAGTCTTATGCCTGGCATTTTGAAAACTGTTGCTCACAACAAGGATCATCCAAAGCCAATAAAGATTTTTGAAGTGGGTGATATATCACTTTTGGATGATAATAGAGATGTTGGTGCAAAAAATCTTCGCCAACTTGCTGCCCTGTACTGTGGTGCTAATGCTGGATTTGAGATAATTCACGGCTTGGTCGACAGAGTAATGGAAAAGAACGGTGTTTCCTTTGTTCTACCTGGTGATAAGTCGGGCTATTACATTGAGCAGTCAGATGAACCTGAGTTTCTTGCTGGTAGACAAGCTAGAATTATTTACAAGGGAAAGCATGCTGGCACTTTTGGCATTGTTCATCCCGAGGTACTAAACAACTTCGACATTCCTGATCCCTGCTCTTTTGTTGAACTTAATATCGAAAGTTTCCTATGA 1890 0.4153 MKRFWDSEHPFLRRGCTQSLRYQNGAMPTVSVGRDRLFAAVGRTYTQEEFEDLCFSFGIELDDVTTEKAIVRKEKHLDEEEADEDEEVIYKIEVPANRYDLLCLEGLAQALRVFCEIQEIPTYRLSDISKNAMLKMHVKPETSVVRPFVVCAVLRGVTFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDKLEGPFTYEALPPSSITFTPLKQERNFRADELMEFYKSDLKLKKFLHIIEDSPVFPVLYDSKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKIVLNTMVTAFSEYCANKFVIEPVEVISSDGKSNIYPDLSVYNMEVSLSYITGLIGVSLEAEEVTKFLNRMQLHAKQSTSAKKQCNLIVSVPPTRSDVLHPCDVMEDVAIAYGFNTIKDKAVADNKGSKRLAASLTLLPLNEISDLIRKEVALIGFTEVLTFILCSKKENFAMLNRKDDKSKAVIIGNPRSSDFEAVRTSLMPGILKTVAHNKDHPKPIKIFEVGDISLLDDNRDVGAKNLRQLAALYCGANAGFEIIHGLVDRVMEKNGVSFVLPGDKSGYYIEQSDEPEFLAGRQARIIYKGKHAGTFGIVHPEVLNNFDIPDPCSFVELNIESFL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01454 629 Gene3D Bira Bifunctional Protein; Domain 2 429 629 IPR045864 -
Phco8g01454 629 SUPERFAMILY Class II aaRS and biotin synthetases 402 628 IPR045864 -
Phco8g01454 629 SUPERFAMILY Putative DNA-binding domain 334 409 IPR009061 -
Phco8g01454 629 FunFam phenylalanine--tRNA ligase beta subunit 429 629 - -
Phco8g01454 629 FunFam phenylalanine--tRNA ligase beta subunit 127 331 - -
Phco8g01454 629 FunFam Phenylalanine--tRNA ligase beta subunit 27 116 - -
Phco8g01454 629 Pfam B3/4 domain 146 306 IPR005146 GO:0003723|GO:0004826
Phco8g01454 629 ProSiteProfiles B5 domain profile. 330 410 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Phco8g01454 629 SMART B5_2 332 405 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Phco8g01454 629 Gene3D - 333 408 - -
Phco8g01454 629 Pfam tRNA synthetase B5 domain 335 405 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Phco8g01454 629 Gene3D - 27 115 - -
Phco8g01454 629 NCBIfam phenylalanine--tRNA ligase subunit beta 27 629 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Phco8g01454 629 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 27 629 IPR045060 GO:0004826|GO:0006432
Phco8g01454 629 Pfam Phe-tRNA synthetase beta subunit B1 domain 27 115 IPR040659 -
Phco8g01454 629 SUPERFAMILY Putative DNA-binding domain 31 121 IPR009061 -
Phco8g01454 629 SUPERFAMILY PheT/TilS domain 138 302 - -
Phco8g01454 629 SMART B3_4_2 145 307 IPR005146 GO:0003723|GO:0004826
Phco8g01454 629 CDD PheRS_beta_core 430 628 IPR041616 -
Phco8g01454 629 Gene3D - 127 331 IPR020825 -
Phco8g01454 629 FunFam Phenylalanyl-tRNA synthetase, beta subunit 333 408 - -
Phco8g01454 629 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 430 625 IPR041616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01454 Phco-Chr8 15022278 15030980 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01454 8 15022278 15030980 Phco8g01454 8 15022278 15030980 ECH