Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01416 ATGGTACAAAATAATAAACGTGGGAAAGGCATATTAGAAAAAAAGGAAAAAGCAACAACAGGAGTCATCGTCTCTTGTGATCTCCGAACACAACACAAACACAAACTAAGCTTCGGAATCTTTACTCTTTCTCTTCCCACGCCCTTCAAGGACTCTGTCTTGTTCGATCTCTCTCTCTCTTTCTCCTTCGTAACTCGTGTCTTCAACCAACCAGGACCAGTTGCTCTCGCTTTCATGATGATAATGAATATACTGCTCTCTAGTGGCTTGATTAGGATGAAACAACATGTGGTGACACTGGCTAGCGGTCTCATGGCAATGCCGGAAACCATCCCTCTGACTACTCCCAGTGCTCAAGTTGTTGGCAATGCCTTTGTGGAGCAATATTATCACATTCTGCACCAATCCCCAAACTTGGTGCACAGGTTTTATCAGGATTCGAGTTTCTTGACCAGATCAGACAACAATGGTGTGATGACAACTGTGACAAGTGTTCAAGAAATCCATGAGAAGATTATTTCCCTGAAGTATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCACATAAGGGAGGTGTGATAGTGTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGAAAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGAAAAAGGATATTTTGTTTTAAATGATGTCTTTAGGTACATTGAGGTGAATGATGCACCGCAGTTAAATTCTGCCTCAGTAAATGTCATCACTGAAAATGCTGAGACAGTGCATGAGCCAGAATCAGAGGAGACACATTCTCCCAAACATCTTGTGGAAGACACTTCAACTTTGGTAGAGGATGAAAACCATAGTAATGGCGGTGAAGTTTATCATCCTCAGGATGAGGAAGAGGGATCAGTTATTGATGAAGAGGTCGCTGAACCCCCTACTGACTTAAGTCAGAATGATATTGTTACGGTGCATGATTCAACTTCTGCTGCTCAGGATGATGCACCAAGGAGATCATATGCATTCATTGTAATGACAAGTAATGTCGCATCTGGCCATGTCTACGTTCCCAGACTAGCTGCAAGAGTGGCATCTGCTAAATCCAGTGAACAATGGCCTACTACTGCCAAATCAACCCCTGTGCCTGAGTCATTTGCTCCTATTAGTGATAGTGCACCTGGGAGTAGTGACCTCCATGAAGAAGCTGAAGGTCACTCCATATATATACGGAACTTGCCATTTAGCGCAACAGTTGAGCAACTTGAAGAGGTTTTTAAGAAATTTGGTCCTATTAAGCACGATGGTATCCAAGTTAGAAGTAGCAAGCACGGATTCTGTTTTGGCTTTGTTGAATTTGAGGAATTGAGTTCCATGCAAAGTGCACTTGAGGCTTCACCTATCACTGTTGGTGAGCGACAAGCTGTTGTTGAGGAAAAGAGAACTACTACAAGAGTCAGCGGTAGTGGGAGAGGGAGGTATCCTCCAGGAAGAGGTGGTTTCCGAAGCGAGAGTTTCAGAGCACGTGGGAAATTTGGCGGTGGACGAGGTTATGGCAGAAATGAATTCAGAAACCAAGGAGAATTCTCAGGGCAACCTAGGAGTTCTCAACGGCCAAATCAAAATGGAGGTGGGCGTGGTGGCGGACGTCAAGGTGTGGGGAACCGTAATTCTACACCGTCATCTTCAGCAGCATGA 1698 0.4399 MVQNNKRGKGILEKKEKATTGVIVSCDLRTQHKHKLSFGIFTLSLPTPFKDSVLFDLSLSFSFVTRVFNQPGPVALAFMMIMNILLSSGLIRMKQHVVTLASGLMAMPETIPLTTPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLTRSDNNGVMTTVTSVQEIHEKIISLKYEDYTAEIKTADAQESHKGGVIVLVTGCLTGKDNVKRKFSQTFFLAPQEKGYFVLNDVFRYIEVNDAPQLNSASVNVITENAETVHEPESEETHSPKHLVEDTSTLVEDENHSNGGEVYHPQDEEEGSVIDEEVAEPPTDLSQNDIVTVHDSTSAAQDDAPRRSYAFIVMTSNVASGHVYVPRLAARVASAKSSEQWPTTAKSTPVPESFAPISDSAPGSSDLHEEAEGHSIYIRNLPFSATVEQLEEVFKKFGPIKHDGIQVRSSKHGFCFGFVEFEELSSMQSALEASPITVGERQAVVEEKRTTTRVSGSGRGRYPPGRGGFRSESFRARGKFGGGRGYGRNEFRNQGEFSGQPRSSQRPNQNGGGRGGGRQGVGNRNSTPSSSAA 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01416 565 MobiDBLite consensus disorder prediction 367 403 - -
Phco8g01416 565 CDD NTF2 117 239 IPR018222 -
Phco8g01416 565 SMART rrm1_1 407 478 IPR000504 GO:0003723
Phco8g01416 565 MobiDBLite consensus disorder prediction 368 392 - -
Phco8g01416 565 CDD RRM_SF 408 465 - -
Phco8g01416 565 MobiDBLite consensus disorder prediction 285 301 - -
Phco8g01416 565 ProSiteProfiles Nuclear transport factor 2 domain profile. 121 237 IPR018222 -
Phco8g01416 565 FunFam Nuclear transport factor 2 family protein 112 241 - -
Phco8g01416 565 SUPERFAMILY RNA-binding domain, RBD 402 510 IPR035979 GO:0003676
Phco8g01416 565 MobiDBLite consensus disorder prediction 285 304 - -
Phco8g01416 565 Gene3D - 391 488 IPR012677 -
Phco8g01416 565 FunFam Ras GTPase-activating protein-binding protein 1 394 521 - -
Phco8g01416 565 MobiDBLite consensus disorder prediction 479 565 - -
Phco8g01416 565 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 408 465 IPR000504 GO:0003723
Phco8g01416 565 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 117 535 IPR039539 -
Phco8g01416 565 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 406 482 IPR000504 GO:0003723
Phco8g01416 565 Pfam Nuclear transport factor 2 (NTF2) domain 121 237 IPR002075 -
Phco8g01416 565 MobiDBLite consensus disorder prediction 525 544 - -
Phco8g01416 565 Gene3D - 110 241 - -
Phco8g01416 565 SUPERFAMILY NTF2-like 117 238 IPR032710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01416 Phco-Chr8 14631572 14639137 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01416 8 14631572 14639137 Phco8g01416 8 14631572 14639137 ECH