Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01412 ATGGAAACTGGAGGAGATAACAAAAATATAGGTGATCTTAATTTGCATCAGACATCTCAATCAACGGAACAAGGAAATGGAATCACGAACAATACTCATAAGGAAGCTCAGCTTTCATCGCAGTCATCATCATCATCCCAGAACTCCTCCATAATGCCTGGTGATGAAACCAAGAACACAGGAAATTCATCCGATGAACCAACAAAGTCAGACAACAAAATCCCTTGTGATACAATGGAATCATCACAAAACCAACCTTCCGCGAGTGAGACGGTTCCCACAAATGTTGAATCACACACTCCACCAAAATGTGATGAAGATTGTGTTCAAATAAACTCTGTGCCAAAACATGAACATGGCGATGTGGCAGATGGGGTAAACCAAGGATTGGAAATACAAACCCCTCCAATTCAGGTGATGGAGCGTCCAGGTGAATCAGACACCTCTCCTGATTACACCTTTCCATCTCATGTCTTCTCCAAGAGCAATGGAAACTCCCAAGTGGGATGGAGCACTGCTTCTAATGAATCATTGTTTAGCATCCACATGGGAAACACGAGCTTCTCAAATGAATTGGGTTGTTTTAAATCCCGGGAGTTTGATAGGCCTGATGATGTATGCGTGCAAGATCAGCCTAATGCTTCACCAACTCACTATCTAGCTACTCCAACAAATAAATTCAATGCTATGAGCCAAAGAACTCATGAACTACTGCACGCACATAGTTCCAAAACAGCTGAAGCAAAAGCTGCTGAGAGAATGAGGGAGGTCATAATGGAAAGTAGTGCCACAGAGAATCTCGGTAAAGGACATTCTCGACGCCATTCAAATGGCAGCAGCAATTCCTATGCGTTTCAACCGTCTTCGAAAAGTCCAGATAGAAGTGTTTCGTCCCTGAGTGCTGGAGCGAAAGAAAAAGAAAAGGAGTCGTCAAATACAGCTGGTGAAGCCCTAAAATCAACCACAAAGGAACCAAGCAACTGGCTGGGTTGCTTTCCATGTTTTGACAAAGGAATAACAGAGGCAATTCTCCTGCTCACTCTTATTCTTCTATCTTTATTCCTTTCTCTTCTCCAAAACTTGCCTCCAATGGCCGCAAAATCAATCACACCCGATGCCGTTTCGACGCTCCTCGCCAACCCTTCCCCCGATTCTTCGTCGGATCTTCCCGACATCGTTGTTCAAGTAGTTGATCTCAAGCCTAGCGGCAATAGATACATGTTCTCTGCCAGTGATGGAAAAAAGAAACTGAGGGCGATTCTTCCTTCGAATATGTATTCTGAGGTTCTTTCCGGGAACATTCAAAACCTAGGTCTTGTTCGCATTCTTGATTACACTCTCAACGACATCCCTAACAAATCTGAAAAGTACCTTATTGTCACGAAATGTGAGCCGGTATCTCCCGCTCTTGAAAAGGAGATTAAGAGCGATGAGCCTGTGATTCTTTTGAAACCCAAGGAAGAGGTTGGTGTGAAGAGTGAAGGTGCTGCTGGGATTCTTTTGAAGCAAAAGCAGGAAGTGGTGACAAAATCTGCTGCGCAGATTCTAAATGAACAACATAGAAATTCGGCTCCTGCTGCACGCTTGGCAATGACACGTAGGGTACGTCCTCTTGTTTCGTTAAACCCTTATCAGGGTAATTGGACGATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTACCTACAAGAATGCTAGGGGTGAAGGTTGTGTATTCAATGTTGAATTGACTGACGAAGAAGGTACTCAAATCCAGGCAACCATGTTTAACGATTCCGCGAGGAAATTTTATGACAGATTTGTTCTGGGAAAGGTTTACTATATTTCGAAGGGGACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTGCAAAATGATTATGAAATGACGCTCAATGAGAATTCTGAGGTGGAAGAGGTGGCGGACGAAGCAAGTTTTGTCCCAGAAACAAAATTTACCTTTGTCCAGATTGATCAGTTAGGTCCTTATGTCAACAAGTCTGAACTTGTGGATGTCATTGGAGTTGTTAAGAATGTGTCTTCAACAATGAGCATTCGTAGGAAGAGTGACAACGAGAGCATTCCAAAGCGCGACATTACTATTGCTGATGAAACGAGGAAGACAGTGGTTGTGTCGTTGTGGAATGATCTTGCTACTAACACAGGACAAGAGCTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATCAAGTCTCTCAGGGTTGGGGACTTCCAAGGTGTTTCTTTGTCAACTATAAGCAGAAGTGTAGTTCTGGTAAATCCAGACGTACCCGAAGCTAAGAAACTCAGAAGCTGGTATGAATTTGAAGGAAAAGATGCTGCAATGGACGCTCTAGGTTCTGGTTCAAGTCCGACATCTAATAATGGAATTAGATCAGTGTACACTGATCGTGTTCCACTTTCTCACATAACCTCAAACCAATCATTGGGGGATACGAAGCCTGCATTTTTCAGCCTTAAAGGATATATAAGCTTCATAAAGCCTGACCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCATTGGTTCTGGATATTGGTGCGAAGGATGCCAGAAAAGCGATGAACAGTGCAGTTTAAGATATATTATGGTTGCTAGAGTTTGCGATACAAGTGGTGAGGCTTTCATCTCCGTTTTTAACGAGGAAGCTGAGAAGATTGTTGGATGCTCTGCTGATGATTTAGATGACCTTAAATCACAAGAAGGAGAAGATAATCCTTATAATCTGAAATTGAAGCAAGCAACTTGGGTTCCACATCTTTTCCGCGTGAGTGTTAGCCAGAACGAGTATAATAACGAGAAGCGGCAAAGGATAACAGCTCGGGCAGTTGTTCCTGTTGACTTCGCTGCAGAGTCAAGGATTATGCTGGAAGAAATATCAAAGATGAGAGCATAA 2943 0.4288 METGGDNKNIGDLNLHQTSQSTEQGNGITNNTHKEAQLSSQSSSSSQNSSIMPGDETKNTGNSSDEPTKSDNKIPCDTMESSQNQPSASETVPTNVESHTPPKCDEDCVQINSVPKHEHGDVADGVNQGLEIQTPPIQVMERPGESDTSPDYTFPSHVFSKSNGNSQVGWSTASNESLFSIHMGNTSFSNELGCFKSREFDRPDDVCVQDQPNASPTHYLATPTNKFNAMSQRTHELLHAHSSKTAEAKAAERMREVIMESSATENLGKGHSRRHSNGSSNSYAFQPSSKSPDRSVSSLSAGAKEKEKESSNTAGEALKSTTKEPSNWLGCFPCFDKGITEAILLLTLILLSLFLSLLQNLPPMAAKSITPDAVSTLLANPSPDSSSDLPDIVVQVVDLKPSGNRYMFSASDGKKKLRAILPSNMYSEVLSGNIQNLGLVRILDYTLNDIPNKSEKYLIVTKCEPVSPALEKEIKSDEPVILLKPKEEVGVKSEGAAGILLKQKQEVVTKSAAQILNEQHRNSAPAARLAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNDSARKFYDRFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVADEASFVPETKFTFVQIDQLGPYVNKSELVDVIGVVKNVSSTMSIRRKSDNESIPKRDITIADETRKTVVVSLWNDLATNTGQELLDIVDKSPVVAIKSLRVGDFQGVSLSTISRSVVLVNPDVPEAKKLRSWYEFEGKDAAMDALGSGSSPTSNNGIRSVYTDRVPLSHITSNQSLGDTKPAFFSLKGYISFIKPDQAMWYRACKTCNKKVTESIGSGYWCEGCQKSDEQCSLRYIMVARVCDTSGEAFISVFNEEAEKIVGCSADDLDDLKSQEGEDNPYNLKLKQATWVPHLFRVSVSQNEYNNEKRQRITARAVVPVDFAAESRIMLEEISKMRA 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01412 980 Gene3D - 534 644 IPR012340 -
Phco8g01412 980 Gene3D - 788 978 IPR012340 -
Phco8g01412 980 MobiDBLite consensus disorder prediction 262 320 - -
Phco8g01412 980 SUPERFAMILY Nucleic acid-binding proteins 368 470 IPR012340 -
Phco8g01412 980 SUPERFAMILY Nucleic acid-binding proteins 803 978 IPR012340 -
Phco8g01412 980 Pfam OB-fold nucleic acid binding domain 548 634 IPR004365 GO:0003676
Phco8g01412 980 Gene3D - 368 481 IPR012340 -
Phco8g01412 980 MobiDBLite consensus disorder prediction 1 108 - -
Phco8g01412 980 FunFam Replication protein A subunit 534 643 - -
Phco8g01412 980 FunFam Replication protein A subunit 791 978 - -
Phco8g01412 980 Gene3D - 648 787 IPR012340 -
Phco8g01412 980 NCBIfam replication factor-a protein 1 (rpa1) 369 977 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Phco8g01412 980 PANTHER SUPPRESSOR SRP40-LIKE PROTEIN 8 335 - -
Phco8g01412 980 SUPERFAMILY Nucleic acid-binding proteins 536 645 IPR012340 -
Phco8g01412 980 FunFam Replication protein A subunit 647 786 - -
Phco8g01412 980 MobiDBLite consensus disorder prediction 10 98 - -
Phco8g01412 980 Pfam Replication factor-A C terminal domain 825 969 IPR013955 -
Phco8g01412 980 CDD RPA1_DBD_B 670 776 - -
Phco8g01412 980 SUPERFAMILY Nucleic acid-binding proteins 653 780 IPR012340 -
Phco8g01412 980 FunFam Replication protein A subunit 368 478 - -
Phco8g01412 980 CDD RPA1_DBD_C 809 977 IPR047192 -
Phco8g01412 980 CDD RPA1_DBD_A 537 640 - -
Phco8g01412 980 MobiDBLite consensus disorder prediction 273 298 - -
Phco8g01412 980 Pfam Replication protein A OB domain 665 762 IPR031657 -
Phco8g01412 980 Pfam Replication factor-A protein 1, N-terminal domain 369 466 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01412 Phco-Chr8 14599356 14608059 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01412 8 14599356 14608059 Phco8g01412 8 14599356 14608059 ECH