Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01379 ATGGATAAGGCTCTCACTACACTGGGAAGTGCTTGGATCTCCAAGAAAGCCAAGGCAGAGATTTCCCACATAACTCACGATCTATCATCTCTCTCAAATACTGTGGAAGAGAAGGCAAAACTTTTCATCAACAAGCTGAAAGGAAAATCCCAGAAGGCTTTACCAGATCTTCTTCGAGAGTACAACCTTCCACCTGGTCTGTTCCCCCGCAACATAACATGCTACGAGTTTGATGTATCGAAAGGAAAGTTGGTAGTGTACTTGTCCTCTCCCTGTGAGGTGTGCTTCAAGGACTCATCCATTGTGAGGTATGCAAAACGTGTCAAAGGGACCTTAACAAAGGGTAAGCTGAATGTTACAGATGGAATGAAGACCAAGGTTCTTGTGTGGGTCAAGGTGACCACTGTTGCTGTTGAGAGTTACAAATCTGACAAATTGTGGTTCACTACTTCTGGAGTTAAGAAATCAAGGCCTAAAGATGCCTATGAAATGCCTCGTGAAGCTATTAAGCACCCAACCCCCTTCGTTTTCACAGCCAACGAAGCAGCCGGCATCGCCACTTTCGTTTTCGTTCGCATTTCTCCTCTGAGGCGGCGGAAGCTTCACTTGAACGAGCCTTTCAACAAACACGAACATAGGAGCGAAGGACGTCCATTGGTTTGGTTACTGAGGCATCATCTCTGGATAGGTTCAGTTTGGTGGCGAAGGAATATATTATATAGACACAGCGAATCTGTACTTCTGTGTCCTCACTTGCTCTTCTCCGCCACTTCTCAAATCCCCTGTCTTCAATCCAAAGCCATGTCGGACGAAGAGCACCATTTTGAGTCCAAGGCTGACGCCGGAGCCTCCAAAACCTACCCTCAGCAAGCCGGTACAATTCGCAAGAACGGTTACATAGTCATCAAAGCCCGTCCTTGCAAGGTTGTGGAAGTTTCTACTTCCAAAACCGGAAAGCACGGTCACGCTAAGTGTCATTTCGTTGGAATTGATATTTTCACTGCCAAGAAGCTTGAGGACATTGTGCCCTCCTCTCACAACTGTGATGTTCCTCATGTGAATCGTACCGATTACCAGCTAATTGATATATCTGAGGATGGATTTGTGAGTCTGCTTACTGAAAATGGGAACACTAAGGATGACCTCAGGCTCCCCACTGATGACAACCTGCTGACTCAGATAAAGGATGGATTTGCGGAGGGCAAGGACCTTGTTGTGTCTGTGATGTCTGCTATGGGTGAGGAACAGATTTGTGCTCTGAAGGATATTGGGCCGAAAAACTAG 1284 0.4642 MDKALTTLGSAWISKKAKAEISHITHDLSSLSNTVEEKAKLFINKLKGKSQKALPDLLREYNLPPGLFPRNITCYEFDVSKGKLVVYLSSPCEVCFKDSSIVRYAKRVKGTLTKGKLNVTDGMKTKVLVWVKVTTVAVESYKSDKLWFTTSGVKKSRPKDAYEMPREAIKHPTPFVFTANEAAGIATFVFVRISPLRRRKLHLNEPFNKHEHRSEGRPLVWLLRHHLWIGSVWWRRNILYRHSESVLLCPHLLFSATSQIPCLQSKAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01379 427 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 317 324 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Phco8g01379 427 NCBIfam translation initiation factor IF-5A 284 420 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Phco8g01379 427 Gene3D - 268 352 IPR014722 -
Phco8g01379 427 SUPERFAMILY Translation proteins SH3-like domain 282 360 IPR008991 -
Phco8g01379 427 Gene3D - 353 426 IPR012340 -
Phco8g01379 427 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 352 421 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Phco8g01379 427 FunFam Eukaryotic translation initiation factor 5A 268 352 - -
Phco8g01379 427 CDD S1_eIF5A 353 423 - -
Phco8g01379 427 FunFam Eukaryotic translation initiation factor 5A 353 425 - -
Phco8g01379 427 SUPERFAMILY Nucleic acid-binding proteins 353 423 IPR012340 -
Phco8g01379 427 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 268 424 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Phco8g01379 427 Gene3D - 32 172 IPR036758 -
Phco8g01379 427 Pfam Protein of unknown function, DUF538 56 163 IPR007493 -
Phco8g01379 427 SUPERFAMILY At5g01610-like 4 170 IPR036758 -
Phco8g01379 427 SMART eIF_5a_2 352 421 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01379 Phco-Chr8 14310816 14319992 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01379 8 14310816 14319992 Phco8g01379 8 14310816 14319992 ECH