Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01343 ATGATCTCCTTATTATTAAGTGATATGGTGACTATATATGTACGTGTAAGCAGAAGGATTGAGTTTTCATCGTTTGGTAAGGTAAAGGGTAGAGTGTGTATATTTATTCGGCATTCGGCTGATGTTTGCATTCCTCCACCATCCATACCAATCCAATCCCTCAAGCGGAGATTTCAAACCCAACTTTGCTTCTTAAAGCTCTTCGTTTTTCTCATCACCGTTCATTCCCAGGTTGAGATGGCAGCGGCACCCGCAGCTACTTTCACTATTGGATCCACCGCTTCCCTTGGCCAAAGAGGAAGCTCTCTTCCTCAATCAAGGTCTTTTGGGTTGAAATTCAACTCCCAGAATCCTTTGAAGAGTTTCTGTGGCCTCAAGGCTATGTCATCTGTAAGATGTGAGTCAGAATTATCTTTCTTAGGTAAGAAAAGTGGTTCTGCTCTGCGAGCATCTTTTGCATCCAAGGCCCAGAAGGAAAACAGCCAGAACTTCAACTACCAGTTGCAGCCTCAGGCTTCGTACAAAGTTGCGGTTCTTGGTGCTGCTGGAGGGATTGGGCAGCCGCTCTCGCTTCTCATCAAGATGTCCCCTTTAGTGTCCGACCTGCATCTCTATGATGTTGCAAATGTCAAGGGAGTCGCTGCTGATATCAGTCACTGCAACACACCCTCACAAGTCAGGGATTTCACTGGAGCTTCTGAGTTGGCAAAATCTTTGAATGGTGTGGATGTTGTTGTCATTCCTGCCGGTGTTCCAAGGAAGCCTGGCATGACTCGTGATGACCTTTTCAACATCAATGCTGGAATAGTCCGGGACTTGGTTTCGGCTGTTGCGGATAATTGCCCTGGTGCTTTTATTCTAATTATCAGTAACCCTGTGAACTCTACTGTGCCTATTGCTGCAGAAGTTTTGAAACAGAAGGGTGTCTATGATCCTAAAAAGCTCTTTGGTGTTACCACACTGGATGTTGTGAGGGCAAACACATTTGTTGCCCAGAGGAAGAACCTGAAGCTGATTGATGTTGATGTCCCTGTTGTTGGGGGCCATGCCGGGATTACCATTCTTCCTCTGTTGTCAAAGACAAGACCCTCAGCGAGTTTCACTGATGAAGAGGTTGAGGAGTTGACGGTCAGGATTCAAAATGCCGGAACTGAGGTTGTGGAAGCAAAGGCAGGTGCTGGGTCTGCTACCTTGTCGATGGCTTATGCAGCTGCTAGATTTGTTGAATCGTCTCTGCGTGCACTTGATGGAGACGGGGATGTGTATGAATGCTCATTTGTGCAATCAGATTTGACTGACCTTCCATTCTTTGCTTCAAGGGTGAAGCTTGGTAAGAAAGGTATCGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCAGAACTCAAGACCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAGCTGTTGCTGCTTAA 1479 0.4632 MISLLLSDMVTIYVRVSRRIEFSSFGKVKGRVCIFIRHSADVCIPPPSIPIQSLKRRFQTQLCFLKLFVFLITVHSQVEMAAAPAATFTIGSTASLGQRGSSLPQSRSFGLKFNSQNPLKSFCGLKAMSSVRCESELSFLGKKSGSALRASFASKAQKENSQNFNYQLQPQASYKVAVLGAAGGIGQPLSLLIKMSPLVSDLHLYDVANVKGVAADISHCNTPSQVRDFTGASELAKSLNGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNCPGAFILIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEVEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVQSDLTDLPFFASRVKLGKKGIEALIPSDLQGLTDYEQKALEALKPELKTSIEKGIAFAQKQAVAA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01343 492 CDD MDH_glyoxysomal_mitochondrial 174 485 IPR010097 GO:0006099|GO:0030060
Phco8g01343 492 Pfam lactate/malate dehydrogenase, NAD binding domain 175 317 IPR001236 GO:0016491
Phco8g01343 492 Gene3D - 172 318 - -
Phco8g01343 492 ProSitePatterns Malate dehydrogenase active site signature. 318 330 IPR001252 GO:0006108|GO:0016615
Phco8g01343 492 SUPERFAMILY LDH C-terminal domain-like 318 485 IPR015955 GO:0003824|GO:0016616
Phco8g01343 492 FunFam Malate dehydrogenase 172 318 - -
Phco8g01343 492 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 163 318 IPR036291 -
Phco8g01343 492 NCBIfam malate dehydrogenase 175 486 IPR010097 GO:0006099|GO:0030060
Phco8g01343 492 Gene3D - 319 490 IPR015955 GO:0003824|GO:0016616
Phco8g01343 492 PANTHER MALATE AND LACTATE DEHYDROGENASE 156 488 - -
Phco8g01343 492 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 319 484 IPR022383 GO:0016616
Phco8g01343 492 FunFam Malate dehydrogenase 319 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01343 Phco-Chr8 13995897 13999082 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01343 8 13995897 13999082 Phco8g01343 8 13995897 13999082 ECH