Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01327 ATGGGATCTGGGGCAGGTAATTTTCTCAAGGTGCTTCTCAGAAACTTCGATGTCCTTGCTGGGCCTGTCGTTAGTCTTGTCTATCCTCTATATGCTTCGATTAGGGCAATTGAGACCAAGTCTCCTATTGATGATCAGCAATGGCTCACTTACTGGGTTCTCTATTCCTTAATCACCCTCTTTGAACTCACATTTGCTAAACTACTTGAATGGATTCCGATATGGCCTTATGCAAAGCTGATTGCAACCTGCTGGTTGGTCCTTCCTTACTTTAGTGGTGCTGCATATGTATATGAGCATTACGTGAGACCTTTATATGTCAATCCTCAAACCATTAACATCTGGTACATTCCAAGGAAAAAGGACACCTTTGGTAAGCGAGATGACATTCTAACTGCTGCAGAGAAGTACATCCAAGAGAATGGAACAGATGCATTTGAGAATCTGATCAATAGGGCTGATAAATCCAGAAGAGCTGGCGGTTATTATACAGCGTATGATGAGACTAGCTTGGGATTAGTCATCTATGTTTTGTATAATGGCTATGACGCCCATGCTGCGAAACCTAGTGCACCGGAAGGGTTGAGAAGCAGAGAGAGAAGAGCCATGGTGCACGTTTCCTTCTACCGAAACTATGGGAAAACGTTCAAGAAGCCTCGTCGTCCATACGAGAAGGAACGTTTGGACGCCGAGTTGAAGCTGGTTGGGGAGTACGGGCTTCGCTGCAAGAGGGAGTTGTGGAGGGTTCAGTATGCCCTCAGCCGTATCCGTAACAATGCCAGGAATCTGTTGACACTGGATGAGAAGAACCCTCGCCGAATCTTCGAGGGTGAAGCACTTCTCCGAAGAATGTTCCGTTATGGACTTCTCGACGAGACGCAGAACAAGCTCGATTACGTGTTGGCCCTCACCGTCGAGAACTTTCTCGAACGCCGCCTCCAAACCCTCGTCTTCAAGTCTGGCATGGCCAAGTCCATTCACCACGCCAGAGTCCTCATCCGCCAGAGGCACATCAGGGTTGGGAGACAGGTGGTAAACATTCCATCGTTCATGGTTAGGGTTGATTCTCAGAAGCACATTGACTTTTCACTCACGAGTCCACTTGGTGGTGGTCGTCCTGGACGCGTGAAGCGAAAGAACCAAAAGGCTGCCGCTAAAAAGGCTGCTGGTGGAGATGGTGATGAGGAGGATGAAGATTAG 1200 0.48 MGSGAGNFLKVLLRNFDVLAGPVVSLVYPLYASIRAIETKSPIDDQQWLTYWVLYSLITLFELTFAKLLEWIPIWPYAKLIATCWLVLPYFSGAAYVYEHYVRPLYVNPQTINIWYIPRKKDTFGKRDDILTAAEKYIQENGTDAFENLINRADKSRRAGGYYTAYDETSLGLVIYVLYNGYDAHAAKPSAPEGLRSRERRAMVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQKAAAKKAAGGDGDEEDED 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01327 399 SUPERFAMILY Alpha-L RNA-binding motif 214 360 - -
Phco8g01327 399 SMART s4_6 311 382 IPR002942 GO:0003723
Phco8g01327 399 ProSiteProfiles S4 RNA-binding domain profile. 311 382 - -
Phco8g01327 399 Gene3D - 310 368 IPR036986 GO:0003723
Phco8g01327 399 SMART Ribosomal_S4_2 210 310 IPR001912 GO:0019843
Phco8g01327 399 Pfam Ribosomal protein S4/S9 N-terminal domain 210 310 IPR001912 GO:0019843
Phco8g01327 399 MobiDBLite consensus disorder prediction 365 399 - -
Phco8g01327 399 ProSitePatterns Ribosomal protein S4 signature. 309 333 IPR018079 GO:0019843
Phco8g01327 399 CDD S4 311 355 - -
Phco8g01327 399 Pfam TB2/DP1, HVA22 family 29 105 IPR004345 -
Phco8g01327 399 PANTHER 30S 40S RIBOSOMAL PROTEIN 209 387 IPR022801 GO:0003735|GO:0015935|GO:0019843
Phco8g01327 399 Pfam S4 domain 311 354 IPR002942 GO:0003723
Phco8g01327 399 NCBIfam 30S ribosomal protein S4 213 368 IPR005710 GO:0003735|GO:0006412|GO:0015935
Phco8g01327 399 FunFam 40S ribosomal protein S9 310 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01327 Phco-Chr8 13838703 13843428 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01327 8 13838703 13843428 Phco7g02263 7 39898833 39901006 ECH
Phco8g01327 8 13838703 13843428 Phco8g01327 8 13838703 13843428 ECH
Phco4g01659 4 16543757 16546593 Phco8g01327 8 13838703 13843428 PCT