Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01323 ATGATGCAACAATACCTAAAGTTAATTATCCTGAAGTGTGGTCTGAGGAGGTTTCCATTGCGATGGAAGAGACACTGTAGGGCGGTGTTGAGTGAGATCCAACAACGAGGTGGAAGTTTCTTGGAGACAAACTCAAATAAGGTTGGTGGAAGTAAAGGTTTGGGGGAGTTCTTCGTTCCTAGTGATCTTTGGTTGGATTCTAGGTGTTCTAAGACTTGGGTATTAGGTGTGACTATGACAGGAGATGGTATTGATGAATTGACAAAAGTTTTGGAAACGTTCTTGGTGTTTCTTGGGGGATGGTCAAATGCTATTATAAGTGACACAGAAACAGACACGCTTCCGTATTCAGTGTCCACTGTTCACACAAAACAAATGGCAAATTCTGCTCCTGCGTACTTCTCCGCTCAAGCAAACGCGCTTCTTCGCAAGAACATTACCTTCCAGAAACGGAACGTGAAAACCAACGTTCGGCTGATTCTGTTCCCGGTGGTGCTATGCTTGTTGCTTTTCGTGCTCCAACTCTTATTCGACACGCAATTCGATAAAAGCATCTTCAAATGCGGCTGCGCGTGTGCCGACAACAGAACCGAAATCTCTCGGTGCCCTGACTCAGAGAAGCGGTGCGGGCTCCAGTATTCCGATTCCTTTCAAGCCGCCCTGTGCTCCATTCCCAACCCCGTCGAATGGCCACCGCTCTTGCAACTTCCGGCTCCCCCGAACCGGGCCGTGCAAACCGGTTTTCTTCCCTTTTTCGATTTGCCCGATGCATCGTGCAGGAGAACCGACTCGTGTCCTCTTTCTCTGCTCTTCACCGCAGAGAATCACTCCTTTGCGCAAAGCGTGTCTGAGAAGATGTTTGGGAGTGCCCTGAGTATAAGTGAGTTTGATGGTAATTTATTTGCTGGTTTGGCCGTGAATGTACTGGGATCTGAATCAAAACCTGGGAGGAACAATTTTATTGAACCTGCTTTAACTTCGGATCTCCCCATTTATTATTTACAAACAAACTGCACAGGAACAGAGAAGTCTGGACTCTCCTTCCCCCCGATGACAGGAACAAACAATGAGATCACATGTGCTCAGGCTATAAATTTATGGCGTAATAGTTCTTCTGAGATTAACAATGAGCTATACAAAGGTTATCAAAGAGGTAACTCAGAGGGACAAGTCAATGAGATAGTTTCAGCTTTTGATTTTCTAAATTCAAATGGGAATAGATATAATGTCAGTATATGGTACAACTCATCCTACAGTCAAGACAGAGGATTTACTGCTAATGCATTGTTGCGGATTCCTCGCTCTGTAAATCTGATTTCCAATTCCTACCTGCAGTTTCTACTTGGACCCGGAGCCAAAATAATTTTTGAGTTTGTAAAGGAAATGCCAAAGCCCGAGACCATCTTTAGGCTTGACATATCTTCTATTGTGGGCACTCTGTTCTTTACATGGGTCATCTTGCAACTTTTTCCTGTTATTTTAACATCACTAGTATATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCATATGGTTATTTTCTTGTCACATCAATAATCTACATGTTGTGCTTTGTGATATTTGGCTCACTCTTAGGATTAAAATTCTTCACAATCAATGAGTACAGCATCCAATTTGTATTTTATTTTATCTATATAAACTTACAAATTGCACTAGCATTTTTGGTGGCTTCCATGTTTTCAAATGTCAAGACTGCTACAGTAACTGCGTATATAGGTGTCTTTGGAACAGGGTTATTAGGTGGCTTTCTTTTCCAATTCTTTGTTCAAAATACATCATTTCCAAGAGGGTGGATAATTCTTATGGAGTTGTATCCTGGGTTTGCTTTATACCGTGGGTTATATGAGTTAGCACAATTTTCCTTTCAAGGGGATACATTGGGGACTGATGGTATGAAGTGGCATAATCTGAGTGAAAGCACTAATGGCATGAAAGAGGTCTTAATTATCATGTTTGCTGAGTGGATAGTGATACTTTTTGCTGCCTTCTACATTGACCAAGTTTTGTCGGCAGGAAGTAGGAAAAATCCTCTTTTCTTCTTAAAAGGATTTCAGAAAAAATCTTCTTTCCAAAAGCTTGATACCCAAATGCAGGTGTCAAAAGTATTCTCTCAAATGGAGAAATCTGATGTCATCCAAGAGAAGGAGAAGGTGGAGGAGCTGCTACTTGAACCAACTATTAAAGATGCAATTCTATGTGATGATCTAAAAAAAGTCTATCCAGGGAGGGATGGAAATCCAGATAAATTTGCAGTAAGAGGGTTGTTCCTTTCTGTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAACATGATGATTGGTCTCACAAAACCAACCTCTGGTACGGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGATGGAATATATACTACCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGACAGCCTGACAGGTAGAGAGCACCTCCTTTTTTATGGCAGACTTAAAAATCTTAGAGGCTCAGTCTTAACGCAAGCAGTAGAGGACTCTTTGAAGGGTTTAAACCTTTTTCACGGAGGAGTTGCTGATAAACAAGTTGGGAAGTACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCCAAAGTTGTTTACATGGATGAACCAAGTTCCGGGTTAGACCCTGCCTCAAGAAAAAGCTTATGGAATGTTGTCAAGCATGCAAAGCAGAACCATGCAATCATTCTTACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTGGGCATATTTGTAAATGGCAGCTTGCAGTGTGTAGGAAATGCGAAGGAGCTTAAAGCAAGATATGGAGGAACATACGTGTTCACAGTGACAACATCGTCGGAGCATGAAAAAGATGTGGAGAACATGGTGCAGAAACTCACCCCAAATGCCAATAAGATATACCATCTCTCTGGTACTCAGAAGTTTGAGCTGCCAAAAGAGGATGTTAGAATATCAGATGTGTTCCAAGCTGTTGATGCTGCTAAGAGAAAGTTCACTGTTTCTGCATGGGGTTTAGTTGACACCACATTGGAAGATGTATTCATTAAGGTTGCACGTGAGTCTCAGGCATTTGATACCTTGTCATAA 3222 0.4215 MMQQYLKLIILKCGLRRFPLRWKRHCRAVLSEIQQRGGSFLETNSNKVGGSKGLGEFFVPSDLWLDSRCSKTWVLGVTMTGDGIDELTKVLETFLVFLGGWSNAIISDTETDTLPYSVSTVHTKQMANSAPAYFSAQANALLRKNITFQKRNVKTNVRLILFPVVLCLLLFVLQLLFDTQFDKSIFKCGCACADNRTEISRCPDSEKRCGLQYSDSFQAALCSIPNPVEWPPLLQLPAPPNRAVQTGFLPFFDLPDASCRRTDSCPLSLLFTAENHSFAQSVSEKMFGSALSISEFDGNLFAGLAVNVLGSESKPGRNNFIEPALTSDLPIYYLQTNCTGTEKSGLSFPPMTGTNNEITCAQAINLWRNSSSEINNELYKGYQRGNSEGQVNEIVSAFDFLNSNGNRYNVSIWYNSSYSQDRGFTANALLRIPRSVNLISNSYLQFLLGPGAKIIFEFVKEMPKPETIFRLDISSIVGTLFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLVTSIIYMLCFVIFGSLLGLKFFTINEYSIQFVFYFIYINLQIALAFLVASMFSNVKTATVTAYIGVFGTGLLGGFLFQFFVQNTSFPRGWIILMELYPGFALYRGLYELAQFSFQGDTLGTDGMKWHNLSESTNGMKEVLIIMFAEWIVILFAAFYIDQVLSAGSRKNPLFFLKGFQKKSSFQKLDTQMQVSKVFSQMEKSDVIQEKEKVEELLLEPTIKDAILCDDLKKVYPGRDGNPDKFAVRGLFLSVPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTQMDGIYTTMGVCPQHDLLWDSLTGREHLLFYGRLKNLRGSVLTQAVEDSLKGLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPKVVYMDEPSSGLDPASRKSLWNVVKHAKQNHAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKARYGGTYVFTVTTSSEHEKDVENMVQKLTPNANKIYHLSGTQKFELPKEDVRISDVFQAVDAAKRKFTVSAWGLVDTTLEDVFIKVARESQAFDTLS 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01323 1073 Pfam ABC-2 family transporter protein 394 684 IPR013525 GO:0016020|GO:0140359
Phco8g01323 1073 FunFam ABC transporter A family member 7 740 1016 - -
Phco8g01323 1073 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 751 988 IPR003439 GO:0005524
Phco8g01323 1073 Pfam ABC transporter 776 917 IPR003439 GO:0005524
Phco8g01323 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 751 983 IPR027417 -
Phco8g01323 1073 CDD ABC_subfamily_A 755 976 - -
Phco8g01323 1073 ProSitePatterns ABC transporters family signature. 890 904 IPR017871 GO:0005524|GO:0016887
Phco8g01323 1073 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 718 1067 IPR026082 GO:0016020|GO:0055085|GO:0140359
Phco8g01323 1073 Gene3D - 743 1018 IPR027417 -
Phco8g01323 1073 SMART AAA_5 781 965 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01323 Phco-Chr8 13782084 13797926 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01323 8 13782084 13797926 Phco8g01323 8 13782084 13797926 ECH