Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01287 ATGAAGATGAGTGAGATGTGGACAACCATGGGGTCAACGTTAGCTAGCTTCATGTTCTTGTGGACGATCATGAGGCAGTACTGTCCCTACGGGGTTCAACGGTTCTTTGAGAAGTGCACACATAGGATCGTGAGTTACTTTTCCCCTTACATTCGGATCTCCTTCCATGAATACATGGGAGACAGGCTAAAGCGCAGTGAGGCCTATGCGGCTGTGGAGGCATACCTCAGTGCCAACACATCAAAGAGTGCTAAAAGGCTCAAAGCTGAAATGGGTAAGGATAGCAGCAACTTGGTGTTGACTATGGATGAGTATGAAAGGGTAACGGATGAGTACGAGGGTGTCAAAGTTTGGTGGGTCTCTAGCAAAGTTATGTCACCAACGAGGTCTCCAATGTCTTATTATCCAGAACAGGAGAAAAGGTTCTACAAGCTCACTTTTCACAACAAGTATAGGGACATAATAACTGAGTCCTATTTGGAGCATGTGATGAGGGAGGGGAAGGAGATTCGTTTGAGGAACAGGCAGAGGAAGTTGTACACTAATAGCCCTGGCTATAAGTGGCCAAGTTACAAGCAAACCATGTGGAGTCACATTGTGTTTGAGCACCCTGCTACTTTTAAAACAATGGCCTTGGAGCCTGAGAAGAAAAAGGAGATCATTGAGGATTTGATCACTTTCAGCAAGAGCAAGGATTTCTATGCAAGGATTGGGAAGGCATGGAAGAGGGGGTACCTTCTTCATGGCCCTCCTGGGACAGGCAAGTCCACTATGATTGCTGCAATGGCCAATTTGTTGGCCTATGATGTCTATGACTTGGAGCTCACTGCAGTAAAGGACAACACAGAGTTGAGGAAGCTTCTGATTGAGACAACCAGTAAGTCTATAATTGTTATTGAAGACATCGATTGCTCTCTTGATCTTACAGGGCAGAGGAAGAAGAAGGCAGATAAGTTGTCGGACGAGGAGACGGATAAGGATGTTGTTGGAAGGAAAGAGGGCAAGGAAGAAGGAGGGAGTGGCAGCAAAGTCACACTCTCAGGGCTGTTGAATTTCATTGATGGGATTTGGTCTGCTTGTGGAGGGGAGAGGTTGATTGTGTTCACAACCAATTATGTGGAGAAACTTGATCCTGCACTCATTAGAAGGGGGAGAATGGACAAACACATTCAGCTCTCCTATTGCACTTTTGATGGCTTTAAAGTGCTTGCAAATAATTACTTGAAGCTAGAAACTCATCCTTTGTTTCACACTATCAAGAGGCTAATAGGGGAGGCCAACATCACCCCAGCTGATGTTGCTGAAAACCTCATGCCTAAGTCCCCACTGGATGATCCTCACAAGTGTCTCTCAAACTTAATTGAGGCACTTGAGGAAGCTGCAAAAGCTGAGGAGCAGGAGCAGAGTTGTCCCATTGAACATGAGGAACTTCTGCAACAAAATGGGTCCATTAAGGAAAATGGTGAGCTTCCAGCTGACCAAGAAATGAATCAATGCCAGCTATGGCTGTGTAATGGTACATAA 1524 0.4547 MKMSEMWTTMGSTLASFMFLWTIMRQYCPYGVQRFFEKCTHRIVSYFSPYIRISFHEYMGDRLKRSEAYAAVEAYLSANTSKSAKRLKAEMGKDSSNLVLTMDEYERVTDEYEGVKVWWVSSKVMSPTRSPMSYYPEQEKRFYKLTFHNKYRDIITESYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFKTMALEPEKKKEIIEDLITFSKSKDFYARIGKAWKRGYLLHGPPGTGKSTMIAAMANLLAYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKADKLSDEETDKDVVGRKEGKEEGGSGSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIQLSYCTFDGFKVLANNYLKLETHPLFHTIKRLIGEANITPADVAENLMPKSPLDDPHKCLSNLIEALEEAAKAEEQEQSCPIEHEELLQQNGSIKENGELPADQEMNQCQLWLCNGT 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01287 507 Coils Coil 447 467 - -
Phco8g01287 507 Pfam Domain associated at C-terminal with AAA 29 121 IPR025753 -
Phco8g01287 507 ProSitePatterns AAA-protein family signature. 364 383 IPR003960 GO:0005524|GO:0016887
Phco8g01287 507 PANTHER BCS1 AAA-TYPE ATPASE 9 465 - -
Phco8g01287 507 Pfam ATPase family associated with various cellular activities (AAA) 246 393 IPR003959 GO:0005524|GO:0016887
Phco8g01287 507 MobiDBLite consensus disorder prediction 317 339 - -
Phco8g01287 507 SMART AAA_5 241 396 IPR003593 GO:0016887
Phco8g01287 507 Gene3D - 201 389 IPR027417 -
Phco8g01287 507 MobiDBLite consensus disorder prediction 317 341 - -
Phco8g01287 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 459 IPR027417 -
Phco8g01287 507 CDD RecA-like_BCS1 220 390 - -
Phco8g01287 507 FunFam AAA-ATPase ASD, mitochondrial 197 390 - -
Phco8g01287 507 Gene3D - 390 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01287 Phco-Chr8 13477054 13478577 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01287 8 13477054 13478577 Phco8g01287 8 13477054 13478577 ECH