Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco8g01278 | ATGACCCTTTCTCTTTCATCCCCTATCTCTGTACCCAACCCTTCACCTTTCTCCCCCACGCTCCTCAACCCAACCACCACCCTCCGCCAACTCTTCTTCGCAACCTCCCCCAAACGAATTTTCCAGTTCCAATCACGCGCCACCAAGTTCAAGGAGCTCATCCCCATAAACCCCTCCGTGACGGTGGAGAAGGGAAAGTACAGCTACGATGTGGAAACCCTAATCAACCGCCTCACCGCACTGCCGCCTCGTGGAAGCATCGCGCGGTGCCTCGACCCCTTCAAAAACAAGCTCTCCCTCAACGACTTCGCCCTCGTGTTCAAGGAGTTCGCGCAGCGCGGGGATTGGCAGCGCTCGCTGCGTCTCTTCAAGTACATGCAGCGCCAGCTGTGGTGCAAGCCCAACGAGCACATATGCACCATCATGATCACGCTCTTGGGTCGCGAAAGCTTGCTCGACAAGTGTCGCGAGGTGTTCGACGAAATGCCAAGCAACGGCGTGGCGCGCACCGTCTACGCTTACACCGCCATCATCAACGCTTATGGCCGTAACGGCCAGTTCCAGGCCTCGCTTGAACTCCTCCTTGCAATGAAGCAGGAGAGGGTTTCGCCGAGTATTTTGACTTACAACACTGTGATTAATGCTTGTGCTAGGGGTGGGTTGGATTGGGAAGGGTTGTTAGGATTGTTTGCTGAAATGAGACATGAGGGGATTCAGCCTGATGTTATCACTTATAATACTTTGCTTTGTGCTTGTGCTCATAGAGGGTTAGGTGATGAGGCTGAAATGGTGTTTAGGACCATGAATGAAAGTGGGATAGTTCCTGATATCAATACTTATAGTTATCTTGTTCAGACGTTTGGGAAGTTGAATAGGTTAGAGAAGGTTTCGGATCTTCTTAGGGAGATGGAATCTGGGGGTAATTTGCCGGATATTACTTCTTATAATGTGTTATTAGAGGCTCATTCTGAATTAGGATCTATCAAAGATGCGATGGGCGTGTTTAGGCAGATGCAGGCTGCAGGGTGTGTGCCGAATGCGGACACGTATAGTATTTTGTTGAATTTGTATGGGAAGCACGGGAGGTATGATGATGTTCGTGAACTTTTTCTTGAGATGAAAGTAAGTAACACGGATCCTGATGTGGGTACCTATAACATTCTCATACAGGTCTTTGGGGAGGGAGGGTACTTTAAGGAGGTGGTCACTTTGTTTCATGACATGGTGGAGGAAAATATTGAGCCCAACATGGAGACTTACGAGGGCTTGATATTTGCTTGTGGGAAGGGAGGGCTTTATGAAGATGCCAAGAAAATTTTACTGCATATGAAAGAGAAAGGAATAGTGCCGACTTCCAAGGCGTACACTGGGGTGATTGAAGCGTTTGGGCAGGCTGCACTGTATGAAGAGGCTCTTGTTGCATTTAACACTATGAAAGAAGTTGGAAGCAACGCAACCCTTGAGACCTACAATTCGTTTGTTCATGCATACGCAAGAGGGGGATTGTACAAAGAAGCGGAAGCAATTTTATCCAGGATGAATGAGTCAGGTTTAAAACGGGATGTGAATTCATTCAACGGTGAGATTGAAGCTTTTAGGCAAGCAGGTCAGTATGAAGAGGCTGTAAAAGCTCATGTTGAAATGGAAAAAGCAAATTGTGAACCTAATGAGCTGACACTTGAAGCAGTGTTAAGTGTATACTGCACTGCTGGGCTTGTTGACGAGAGTGAGGAGCAGTTCCAAGAAATCAAAGCTTCAGGACTACTTCCCAGTGTCATGTGCTACTGCATGATGCTAGCTCTTTATGCAAAGAATGACAGATCAAAGGATGCCTATAATTTAATTGATGAAATGATCAAAATAAGGGTGTCGGATGTCCATCAAGTGATTGGACAGATGATCAAGGGAGATTTTGACGATGAGTCTAATTGGCAGATTGTGGAATACATCTTTGACAAGCTCATTTCCGAAGGGTGTGGGTTGGGGGTGAGGTTCTACAATGCAGTGTTAGAAGCTCTTTGGTGGATGTTCCAGCGAGAAAGGGCTGCTAGAGTTCTCAATGAAGCATCAAAGCGAGGGCTGTTCCCTGAACTTTTTCGTAAAAGTAAACTAGTATGGTCTGTGGATGTACACAGGATGTCAGAAGGTGCTGCATTAACAGCACTATCAGTTTGGCTGAACAATATGCAGGAAATGTTCATGATTGGGAAGGATCTTCCTGTGCTTGCAACAATTGTTGTGGTTCGGGGTGAGATGGAGAAAACCATAGATGCCCAAGATTTCCCTATCGCAAAGGCTGCCATGTCATTCTTGCAGGATAATGTCCCATCATCATCCTTTACTTTCCCTGAATGGAACAAAGGTCGCATTGTTTGTCAACAGTCGCAACTAAGACAAATTCTGAGTGGCACTGAGTCATCTTCTAGTAGGAAAAAAATGGGTAAATTAATATCTTTGAGTAATTCCCCATTGACTACTGCAGGTGCTATAGCATCCAAATCTGATGGTAAAGCTAACGATGTTGATTCTAGAACCGATAGTACGCGAACTCAGCTTCTAACCAGTGCAGTTTAG | 2574 | 0.4611 | MTLSLSSPISVPNPSPFSPTLLNPTTTLRQLFFATSPKRIFQFQSRATKFKELIPINPSVTVEKGKYSYDVETLINRLTALPPRGSIARCLDPFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQLWCKPNEHICTIMITLLGRESLLDKCREVFDEMPSNGVARTVYAYTAIINAYGRNGQFQASLELLLAMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLCACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSDLLREMESGGNLPDITSYNVLLEAHSELGSIKDAMGVFRQMQAAGCVPNADTYSILLNLYGKHGRYDDVRELFLEMKVSNTDPDVGTYNILIQVFGEGGYFKEVVTLFHDMVEENIEPNMETYEGLIFACGKGGLYEDAKKILLHMKEKGIVPTSKAYTGVIEAFGQAALYEEALVAFNTMKEVGSNATLETYNSFVHAYARGGLYKEAEAILSRMNESGLKRDVNSFNGEIEAFRQAGQYEEAVKAHVEMEKANCEPNELTLEAVLSVYCTAGLVDESEEQFQEIKASGLLPSVMCYCMMLALYAKNDRSKDAYNLIDEMIKIRVSDVHQVIGQMIKGDFDDESNWQIVEYIFDKLISEGCGLGVRFYNAVLEALWWMFQRERAARVLNEASKRGLFPELFRKSKLVWSVDVHRMSEGAALTALSVWLNNMQEMFMIGKDLPVLATIVVVRGEMEKTIDAQDFPIAKAAMSFLQDNVPSSSFTFPEWNKGRIVCQQSQLRQILSGTESSSSRKKMGKLISLSNSPLTTAGAIASKSDGKANDVDSRTDSTRTQLLTSAV | 857 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco8g01278 | 857 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 381 | 415 | IPR002885 | - | |
| Phco8g01278 | 857 | NCBIfam | pentatricopeptide repeat | 349 | 382 | IPR002885 | - | |
| Phco8g01278 | 857 | NCBIfam | pentatricopeptide repeat | 384 | 416 | IPR002885 | - | |
| Phco8g01278 | 857 | NCBIfam | pentatricopeptide repeat | 529 | 557 | IPR002885 | - | |
| Phco8g01278 | 857 | NCBIfam | pentatricopeptide repeat | 243 | 277 | IPR002885 | - | |
| Phco8g01278 | 857 | NCBIfam | pentatricopeptide repeat | 489 | 521 | IPR002885 | - | |
| Phco8g01278 | 857 | NCBIfam | pentatricopeptide repeat | 138 | 168 | IPR002885 | - | |
| Phco8g01278 | 857 | NCBIfam | pentatricopeptide repeat | 172 | 205 | IPR002885 | - | |
| Phco8g01278 | 857 | NCBIfam | pentatricopeptide repeat | 314 | 347 | IPR002885 | - | |
| Phco8g01278 | 857 | NCBIfam | pentatricopeptide repeat | 279 | 311 | IPR002885 | - | |
| Phco8g01278 | 857 | NCBIfam | pentatricopeptide repeat | 208 | 242 | IPR002885 | - | |
| Phco8g01278 | 857 | NCBIfam | pentatricopeptide repeat | 419 | 451 | IPR002885 | - | |
| Phco8g01278 | 857 | Gene3D | Tetratricopeptide repeat domain | 547 | 625 | IPR011990 | GO:0005515 | |
| Phco8g01278 | 857 | ProSiteProfiles | Smr domain profile. | 708 | 798 | IPR002625 | - | |
| Phco8g01278 | 857 | Gene3D | Tetratricopeptide repeat domain | 78 | 220 | IPR011990 | GO:0005515 | |
| Phco8g01278 | 857 | Gene3D | Tetratricopeptide repeat domain | 325 | 427 | IPR011990 | GO:0005515 | |
| Phco8g01278 | 857 | Gene3D | Tetratricopeptide repeat domain | 221 | 324 | IPR011990 | GO:0005515 | |
| Phco8g01278 | 857 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 241 | 275 | IPR002885 | - | |
| Phco8g01278 | 857 | Gene3D | Tetratricopeptide repeat domain | 431 | 546 | IPR011990 | GO:0005515 | |
| Phco8g01278 | 857 | SMART | SMR_2 | 705 | 795 | IPR002625 | - | |
| Phco8g01278 | 857 | MobiDBLite | consensus disorder prediction | 828 | 857 | - | - | |
| Phco8g01278 | 857 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 521 | 555 | IPR002885 | - | |
| Phco8g01278 | 857 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 486 | 520 | IPR002885 | - | |
| Phco8g01278 | 857 | Pfam | Pentacotripeptide-repeat region of PRORP | 469 | 573 | IPR033443 | - | |
| Phco8g01278 | 857 | FunFam | Pentatricopeptide repeat-containing protein At1g74850, chloroplastic | 221 | 323 | - | - | |
| Phco8g01278 | 857 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 416 | 450 | IPR002885 | - | |
| Phco8g01278 | 857 | PANTHER | OS03G0856100 PROTEIN | 334 | 803 | - | - | |
| Phco8g01278 | 857 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 170 | 204 | IPR002885 | - | |
| Phco8g01278 | 857 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 135 | 169 | IPR002885 | - | |
| Phco8g01278 | 857 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 556 | 590 | IPR002885 | - | |
| Phco8g01278 | 857 | Pfam | Pentatricopeptide repeat domain | 299 | 359 | IPR002885 | - | |
| Phco8g01278 | 857 | Pfam | Pentatricopeptide repeat domain | 229 | 289 | IPR002885 | - | |
| Phco8g01278 | 857 | Pfam | Pentatricopeptide repeat domain | 158 | 216 | IPR002885 | - | |
| Phco8g01278 | 857 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 346 | 380 | IPR002885 | - | |
| Phco8g01278 | 857 | Pfam | PPR repeat family | 380 | 427 | IPR002885 | - | |
| Phco8g01278 | 857 | Pfam | PPR repeat | 594 | 621 | IPR002885 | - | |
| Phco8g01278 | 857 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 276 | 310 | IPR002885 | - | |
| Phco8g01278 | 857 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 311 | 345 | IPR002885 | - | |
| Phco8g01278 | 857 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 205 | 240 | IPR002885 | - |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco8g01278 | 8 | 13371548 | 13378167 | Phco8g01278 | 8 | 13371548 | 13378167 | ECH |