Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01266 ATGTCCATCTCAATTCCCAACCGTCAATTGTTCATAGACGGTGACTGGAAAGCCCCTGTCCTCAGCAGACGAATTCCCATCATCAACCCTTCCACACAACAGATCATCGGGGAGATCCCAGCCGCTACTAAGGAAGACGTCGACCTCGCCGTCGCCGCCGCCAAAGCCGCCCTCTCCCGCAACAAAGGCGCCGATTGGGCCTCTGCATCCGGCGCTGTTCGGGCCCGCTATCTCCGTGCCATCGCTGCCAAGGTCACCGAGAAAAAACCCGAACTCGCAAAATTCGAAGCCGTCGATTGTGGAAAACCGCTGGATGAAGCCGCCTGGGACATTGACGATGTTGCTGGTTGCTTTGAGTTCTACGCTGATCTGGCTGAAAAATTGGACTCCAAGCAAAAGGCTCCGGTGTCTCTTCCCATGGACACATTCAAGAGTTACGTTCTTAAGGAGCCAATTGGGGTTGTAGGATTAATAACTCCCTGGAATTATCCTCTGTTGATGGCTACGTGGAAGGTTGCTCCTGCTCTGGCAGCGGGTTGTGCTGCAATATTGAAGCCCTCTGAGTTGGCATCTGTGACCTGCTTGGAGCTAGGTGAGATTTGCAAAGAAGTGGGGCTTCCTCCTGGTGTGTTGAACATTCTCACTGGATTAGGACCCGAAGCCGGTGCTCCATTAGCAGTCCATCCTGATGTCGATAAGATTGCCTTTACTGGAAGCTCGGCAACTGGGAGCAAGATCATGGCGGCCGCAGCTCAGCTGGTCAAGCCTGTTTCGCTAGAGCTGGGTGGAAAAAGTCCAATCATTGTCTTTGAGGATGTTGACCTTGACAAGGCTGCTGAATGGACCATCTTTGGCTGCTTCTGGACAAATGGTCAGATATGCAGTGCAACTTCCCGCCTTATTGTTCATGAAAGTATAGCAACAGAATTTTTGAATAGGATTGCAAAATGGATAAAAAAGATCAAAATTTCTGATCCCTTGGAAGAAGGTTGCAGACTAGGCCCTGTTGTTAGCGAGGCACAGTATGAAAAAGTATTGAAGTTTATCTCAAATGCCAAGAGTGAGGGTGCAACCATTTTTACTGGTGGGTCTCGCCCCGAGCATCTAAAGAAGGGATTCTTTGTTGAACCGACTGTCATAACTGATGTGACTACCCCCATGCAAATTTGGAGAGAAGAAGTATTTGGACCTGTTCTTTGTGTAAAAACATTTAGCACTGAGGAAGAAGCTATTGATCTAGCAAATGACACTGTATATGGCTTAGGGTCTGCTGTAATATCAAATGATCTAGAAAGATGTGAGCGAATTACCAAGGCTTTTAAGGCAGGAATTGTGTGGATTAATTGCTCTCAACCATGCTTCACTCAAGCCCCATGGGGAGGCATTAAACGCAGCGGTTTTGGTCGAGAACTAGGAGAATGGGGACTTGATAATTACTTAAGTGTGAAGCAAGTGACTCAGTACATCTCGGATGAACCGTGGGGCTGGTACCAGTCTCCTTCAAAGTTATGA 1512 0.4828 MSISIPNRQLFIDGDWKAPVLSRRIPIINPSTQQIIGEIPAATKEDVDLAVAAAKAALSRNKGADWASASGAVRARYLRAIAAKVTEKKPELAKFEAVDCGKPLDEAAWDIDDVAGCFEFYADLAEKLDSKQKAPVSLPMDTFKSYVLKEPIGVVGLITPWNYPLLMATWKVAPALAAGCAAILKPSELASVTCLELGEICKEVGLPPGVLNILTGLGPEAGAPLAVHPDVDKIAFTGSSATGSKIMAAAAQLVKPVSLELGGKSPIIVFEDVDLDKAAEWTIFGCFWTNGQICSATSRLIVHESIATEFLNRIAKWIKKIKISDPLEEGCRLGPVVSEAQYEKVLKFISNAKSEGATIFTGGSRPEHLKKGFFVEPTVITDVTTPMQIWREEVFGPVLCVKTFSTEEEAIDLANDTVYGLGSAVISNDLERCERITKAFKAGIVWINCSQPCFTQAPWGGIKRSGFGRELGEWGLDNYLSVKQVTQYISDEPWGWYQSPSKL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01266 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Phco8g01266 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Phco8g01266 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Phco8g01266 503 Pfam Aldehyde dehydrogenase family 23 485 IPR015590 GO:0016491
Phco8g01266 503 SUPERFAMILY ALDH-like 5 486 IPR016161 GO:0016491
Phco8g01266 503 CDD ALDH_F10_BADH 27 487 - -
Phco8g01266 503 PANTHER ALDEHYDE DEHYDROGENASE 4 502 - -
Phco8g01266 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Phco8g01266 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Phco8g01266 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01266 Phco-Chr8 13251318 13255579 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01266 8 13251318 13255579 Phco8g01266 8 13251318 13255579 ECH
Phco8g01266 8 13251318 13255579 Phco7g02179 7 38634470 38638721 PCT