Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01249 ATGGGACCTGCCAAACGTAAGAGAGGACGCAAACCCAAAACCTCCGCCCCCGAAACCCTAGACATCCCCACCCCTTCCCCCGTCACCGCTACCGCCGCTGCCGCCCCTAACTCCGCTGCCATCGCTGCCTCAATGGAGGACGTCTTTTCCGTCGGCAACGTCGAGCTCATCGACAACACCGCCTCTACCCACGTTCGCCGCCGCCGTGGCCGCCCCAAGAAGCTCCCCACCCACTCAGACAAACCCCTCTCTCGCCGCCCCGCCCGCCCCCTCGACAACGGCGTCGGAGACTTCTCGGTTCCCGGCGACGCCGGGGTGTCTGCCTTGGTGGCGATGGAGGCGGACACGGGGTGGGAGGCGCGTGTGCTGCCGGCGATGGACTCCGTGGTGAAGGTGTTTTGTGTCCACACGGAACCGAATTTCTCGCTGCCATGGCAGCGGAAGAGGCAGTACAGCTCAAGTAGTAGCGGGTTTGTGATTGGCGGGAGAAGGGTTCTGACGAATGCGCATTCGGTGGAACACTACACACAGGTCAAGCTCAAGAAACGTGGCTCTGATACCAAGTACTTGGCCACTGTGCTTGCCATTGGAACCGAATGTGACATTGCCATGCTTACAGTGGATGATGATGAGTTCTGGCAAGGGATGTCACCTGTAGAGTTTGGGGAGTTGCCTGCACTTCAAGATGCGGTTACTGTTGTGGGCTACCCAATTGGTGGAGACACTATCTCTGTGACCAGTGGTGTTGTATCACGCATAGAGATTCTATCTTATGTTCATGGTTCTACAGAACTTTTAGGTTTACAGATAGATGCTGCTATAAATTCTGGCAATTCTGGTGGACCTGCATTTAATGATAAAGGAAACTGTGTAGGGATTGCATTTCAGTCCCTTAAGCACGAAGATGTGGAGAATATAGGTTATGTCATTCCAACACCAGTTATCATGCATTTCATCCGGGATTATGAGAAGAATGGAGGCTACACTGGGTTCCCTATTCTAGGAGTTGAGTGGCAGAAGATGGAAAATCCTGATCTGCGAATGGCAACAGGCATGAGACCTGACCAGAAAGGTGTGCGCATTAGAAGAATTGATCCTACTGCTCCAGAATCTAAGGTTTTGGAGCCATCAGATGTTATCCTTAGTTTTGATGGGATTGATATTGCCAATGATGGAACAGTTCCATTTCGTCATGGAGAGCGCATTGGTTTCAGTTATCTCATCTCACAGAAATATACTGGGGATAATGCAGCAATAAAAGTACTGCGAAATCCAGACATTTTAAAATTTGACATTAAACTTGATAGTCACAGAAGGCTTATTCCATCACATAGCAAGGGCAAGCCTCCCTCTTATTATATAATTGCTGGATTTGTTTTTACAACTGTTTCAGTTCCATATCTTCGTTCTGAGTATGGAAAGGATTATGAATATGAAGCACCAGTGAAGCTTTTGGATAAATTGCTGCATTCAATGCCACAATCACCAGATGAACAACTTGTTGTGGTCTCTCAGGTGCTTGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACATCCAGGTCCTTGCTTTCAATGGTAAACCAGTGAAAAACCTGAAGAGCTTGGCCACTATGGTAGAGAGCTGCAATGATGAATATCTAAAATTTGATCTAGATTATGATCAGATAGTGGTGCTTCGCTCAAAGACTGCAAAAGCAACCACCCTTGATATTCTTGCAACACACTGTATTCCATCAGCGATGTCTGATGATCTTAAGTCATGA 1770 0.4814 MGPAKRKRGRKPKTSAPETLDIPTPSPVTATAAAAPNSAAIAASMEDVFSVGNVELIDNTASTHVRRRRGRPKKLPTHSDKPLSRRPARPLDNGVGDFSVPGDAGVSALVAMEADTGWEARVLPAMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWQGMSPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVIMHFIRDYEKNGGYTGFPILGVEWQKMENPDLRMATGMRPDQKGVRIRRIDPTAPESKVLEPSDVILSFDGIDIANDGTVPFRHGERIGFSYLISQKYTGDNAAIKVLRNPDILKFDIKLDSHRRLIPSHSKGKPPSYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADINIGYEDIVNIQVLAFNGKPVKNLKSLATMVESCNDEYLKFDLDYDQIVVLRSKTAKATTLDILATHCIPSAMSDDLKS 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01249 589 Pfam PDZ domain 441 586 IPR041517 -
Phco8g01249 589 PRINTS HtrA/DegQ protease family signature 264 281 IPR001940 GO:0004252|GO:0006508
Phco8g01249 589 PRINTS HtrA/DegQ protease family signature 185 205 IPR001940 GO:0004252|GO:0006508
Phco8g01249 589 PRINTS HtrA/DegQ protease family signature 373 385 IPR001940 GO:0004252|GO:0006508
Phco8g01249 589 PRINTS HtrA/DegQ protease family signature 227 251 IPR001940 GO:0004252|GO:0006508
Phco8g01249 589 PRINTS HtrA/DegQ protease family signature 157 169 IPR001940 GO:0004252|GO:0006508
Phco8g01249 589 Gene3D - 213 324 IPR043504 -
Phco8g01249 589 FunFam protease Do-like 9 214 324 - -
Phco8g01249 589 MobiDBLite consensus disorder prediction 1 31 - -
Phco8g01249 589 Gene3D - 108 212 IPR043504 -
Phco8g01249 589 SUPERFAMILY PDZ domain-like 357 439 IPR036034 GO:0005515
Phco8g01249 589 Gene3D - 327 439 IPR036034 GO:0005515
Phco8g01249 589 MobiDBLite consensus disorder prediction 62 95 - -
Phco8g01249 589 CDD PDZ_serine_protease 332 424 - -
Phco8g01249 589 Gene3D - 440 589 IPR046449 -
Phco8g01249 589 FunFam Protease Do-like 9 109 212 - -
Phco8g01249 589 SUPERFAMILY Trypsin-like serine proteases 124 326 IPR009003 -
Phco8g01249 589 PANTHER - 61 587 - -
Phco8g01249 589 Pfam Trypsin-like peptidase domain 156 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01249 Phco-Chr8 13073885 13078920 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01249 8 13073885 13078920 Phco8g01249 8 13073885 13078920 ECH