Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01245 ATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTTATGAAATTGATGATGAGTGATTATACAGTGGAGACGATAAACGATGGACTTAGTGAATTCAATGTTGAGTTTCATGGTCCAAAAGAAAGTCTTTATGAAGGTGGAGTCTGGAAAATTCGTGTTGAGCTTCCTGATGCTTACCCATATAAATCCCCTTCTATTGGCTTTGTGAACAAAATATTCCACCCAAATGTCGATGAGTTATCTGGCTCCGTATGCTTGGATGTCATTAACCAATCTTGGAGCCCAATGTTTGATCTTCTAAATGTCTTTGAAGTTTTTCTTCCACAACTCCTGCTTTATCCAAATGCTTCAGATCCTCTCAATGGCGATGCAGCATCGTTAATGATGAAGGATAAAAAGTTGTATGACCAGAAAGTTAAAGAGTATTGTGAGCGGTATGCTAAGAAGGAAAACAATAGCAACTCTACAGCTGGTGAGGAGAGTGGAGATGACGAAGACATCAGTGAAGAAGACAGTGGATCTAGTGATGATGACATTCCTGGTCATGCTGATCCTTAA 558 0.3961 MSSPSKRREMDVMKLMMSDYTVETINDGLSEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYDQKVKEYCERYAKKENNSNSTAGEESGDDEDISEEDSGSSDDDIPGHADP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01245 185 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Phco8g01245 185 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Phco8g01245 185 CDD UBCc 7 143 IPR000608 -
Phco8g01245 185 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Phco8g01245 185 SUPERFAMILY UBC-like 4 150 IPR016135 -
Phco8g01245 185 SMART ubc_7 4 148 - -
Phco8g01245 185 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Phco8g01245 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Phco8g01245 185 MobiDBLite consensus disorder prediction 146 185 - -
Phco8g01245 185 MobiDBLite consensus disorder prediction 159 174 - -
Phco8g01245 185 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01245 Phco-Chr8 13028747 13033991 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01245 8 13028747 13033991 Phco8g01245 8 13028747 13033991 ECH