Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g01242 ATGGCGACGACTACAAAACCTCTTTCTCACACAGTTAGCGTCTTCAACATACCTCGCTCTGCCACCGCCAAGGACCTCCTCCACTTCATCGAATCCAAGGTGGGTCCTTCCACAGTCTTTGCCCTCGAAATCTTCTCCGACAACGCCAACTGGAAGTCCCGCGGCGCTGGCCGCGTCCAGTTCGAGGCCCTCGACGCCAAGTCCCGCGCCCTCTCTCTCTCCCAACTCCAACAACTGCTCATCCACTCGCATTTCCTCCGCCTCTCCAATACCTCCGAAGACATCATTTTCCGCCCCCTCCACCGCCTTCAAAACGGAGTCCTCTACGCCGGCTTCATGCTCTCCGACGACCGTATGAGCGTCCTCGATTCCTGGGAGGGCGTTGCGGGCTTGGTCGTGCCCCAAAGGAGGAAGCTTGACTTCTTGGTGTGGCATGATGACGACTGTTACCGACTCGAGATTTTTTTTGAGGATATTTTGGAGTCTCATGGCTATTGTTTGGGAGAAGATGGCAAACTCAATGCCCTCCTCTTGAAGCTTAAATTTGGGCCAAGAATTTATAAGAAAAAGACGGGGCCAGATGTGGCAACCACGTTTAGGAGTGATAGGTACCATTTTTGTAAGGAGGATTCTGAGTTTCTTTGGGTGCGGACTACTGACTTTTCGGCTCTGAAGTCAATTGGGCACTCTACTTCATTTTGTTGGGAAATTGCGGAAGAACAATTGGCTTCGGATGTTTTTACAAGTTTGCCGCTCTACAAGGAAAATTTAAGAGATTTGGCTCTGGAGGATGGGGAAGAATTCTGTTCTTCCACGGAAGCAGTTCCTCTTGTAAAGTGTGCGTCGCAATCCAAGTTACCTTACGAGGCCCTTTTCCAGTTGAATTCTCTTGTTCATACTCAGAAAATTAGCCTTGCTTCGGTGGATGATGAATTGATTGACTTGTTGGGAGGCTTAGATGAAGAAATTAGAGCTGTGATTTTTCAGAAATTGCACCAGATGGGCTTCACTTGTTATGAGCCTCTTAAATTTGTGAAGACTCAGTTGCATGTGCTGAGTAACAAGAAAAGAAGTCCACCACCATCTTCACAGAAAAGGTTGACAGATAATAACATTATGAGCTGTCATAGAGCCTTGGTTACCCCAACAAAGATATATTGCCTTGGTCCCGAGCTTGAAACGTCAAACCATGTGGTAAAGCACTTTGCATCCTGTGCCTCGGACTTCATGAGGATTACCTTTGTTGAAGAGAATTGGAATAAGCTTCCAAATTATGCTGTATCGACTGGTGTGCAAAAGGGAATCTTTTCAAAGCCTTTTAAAACTGAAATATATAAGCGGATATTGACTATTCTTCGAGATGGGATTGTAATTGGATCAAAGAGATTTGAGTTCCTGGCCTTCTCTGCTAGTCAGCTGCGTTCAAATTCTGTTTGGTTATTTGCTTCTAATGACAATGTGAAAGCAACAGATATCAGAGAATGGATGGGATGCTTCAATAATATACGCAGTGTGTCTAAATGTGCAGCGAGGATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTTTTGAAGTGGCCCCTCAAGATGTAGAGGTAATTCCAGATATTGAAGTTACCTCTGATGGTGTAAGCTACTGTTTCTCAGATGGTATTGGAAAAATTTCCCAATCTTTTGGTAGGCAAGTTGCTCAAAAGCTCAACTTAGATCATAGTCCTTCAGCATTTCAAATTCGGTTTGGAGGATATAAAGGTGTCATAACTGTTGATCGCCATTCATTTAGGAAGTTATCATTGCGCAACAGCATGCTTAAGTTTGAATCCAAAAATAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGCTGTCTACCTTAGGAGTAAAAGATGAGGCATTTTTGGCAAGGCAACAGGGCCAATTGAATTTGTTAGGAAGGATGTTGACTGATAGTAAGGCAGCTTTGGATGTTTTGGAAAGTTTGAATGGAGCTGATTCAAGGAGCATTCTAGTGAAGATGTTGCATGAGTTTAATGAGCCAAACAGTGAGCCTTACCTATCAATGATGCTTAAGGCTTACTATGCATACCAATTATCTGACTTGAAAAGTAGATGCCGAATATTTGTTCCCAAGGGTCGAGTCTTAGTAGGTTGCTTGGATGAAACTGGTCTTTTGAATTATGGTGAAGTATTTGTTCGTGTAACAGTGAAAAGAACTACGGAAAAGTTTGATGATAACTTAAGGAAAGGGGGTGACGATGATAGCACACGTATAATAGTGGGAAAGGTGGTGGTCACGAAAAATCCTTGTCTTCACCCAGGAGACGTAAGAGTGCTTGATGCTATCTACAATGAAGAATTAGAGGAAAAGGGTTTGAGGGATTGCCTTGTATTTCCACAAAACGGACATAGGCCCCATCCAAATGAATGCTCTGGAGGTGATCTTGATGGAGATTTGTTTTTCATAAGCTGGGACAAAGATCTAATCCCAGCTCAAACTGAGGCTCCAATGGACTACACAGGACGTAGACCTCGTATAATGGACCATAAGGTGACCCTAGAGGAAATCCAACATTTTTTTGTGGATTACATGATCAATGATACTTTGGGTGCTATCTCCACCGCACATCTAGTTCACGCCGACCGTGAACCAGATAAGGCCAGGAGTAGAAAATGTTTGGAGTTAGCAGAGCTTCACTCCATGGCTGTTGACTTTGCAAAGACCGGAGCACCTGCTGCAATGCCTAGAGTTTTAAAACCAAGAGAGTTTCCAGATTTCATGGAGAGGGTGGAGAAGCCTATGTACATCTCCAGGGGGGTATTAGGAAAACTTTATCGTGCTATAATTGAGTCTCAACTGCAAATTAAATATAGTTTTGTGTGGTCAGAGAAGCTTGCTGAAGAAGCATATGATCGTAGCCTTGAAGTGAATGGTTTTGAGGCCTTCCTTGAGACAGCCTCAAGTCACAAAGAAATGTACGCGCAGAAGATGAGCAGTTTGATGAACTTCTATGGTGCCGAGACTGAGGATGAAATGCTACTTGGTAACTTGCAAAACCGTGCTTCATATTTGCAGCGTGATAACAGGAGATATGGTGATATGAAAGATCGGATTCTGCTCTCAGTGAAGAATCTTCAGCGCGAAGCTAAAGAATGGTTTGAAACTAGTTGCCAACCGCATGAATATCGTCCCATGGCTTCTGCATGGTATCATGTGACCTATCACCCCAGCTATTATTGCCAGGAAAGCTCATGTTTTCTTAGCTTCCCATGGATAGTTGGTGAGGTTTTGTTGCAGATAAAGTCTGTAAACAAAGCAGTTCAAAGATGA 3360 0.4375 MATTTKPLSHTVSVFNIPRSATAKDLLHFIESKVGPSTVFALEIFSDNANWKSRGAGRVQFEALDAKSRALSLSQLQQLLIHSHFLRLSNTSEDIIFRPLHRLQNGVLYAGFMLSDDRMSVLDSWEGVAGLVVPQRRKLDFLVWHDDDCYRLEIFFEDILESHGYCLGEDGKLNALLLKLKFGPRIYKKKTGPDVATTFRSDRYHFCKEDSEFLWVRTTDFSALKSIGHSTSFCWEIAEEQLASDVFTSLPLYKENLRDLALEDGEEFCSSTEAVPLVKCASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLLGGLDEEIRAVIFQKLHQMGFTCYEPLKFVKTQLHVLSNKKRSPPPSSQKRLTDNNIMSCHRALVTPTKIYCLGPELETSNHVVKHFASCASDFMRITFVEENWNKLPNYAVSTGVQKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNVKATDIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVAPQDVEVIPDIEVTSDGVSYCFSDGIGKISQSFGRQVAQKLNLDHSPSAFQIRFGGYKGVITVDRHSFRKLSLRNSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEAFLARQQGQLNLLGRMLTDSKAALDVLESLNGADSRSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGEVFVRVTVKRTTEKFDDNLRKGGDDDSTRIIVGKVVVTKNPCLHPGDVRVLDAIYNEELEEKGLRDCLVFPQNGHRPHPNECSGGDLDGDLFFISWDKDLIPAQTEAPMDYTGRRPRIMDHKVTLEEIQHFFVDYMINDTLGAISTAHLVHADREPDKARSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVEKPMYISRGVLGKLYRAIIESQLQIKYSFVWSEKLAEEAYDRSLEVNGFEAFLETASSHKEMYAQKMSSLMNFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQPHEYRPMASAWYHVTYHPSYYCQESSCFLSFPWIVGEVLLQIKSVNKAVQR 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g01242 1119 Pfam RNA dependent RNA polymerase 380 958 IPR007855 GO:0003968
Phco8g01242 1119 SUPERFAMILY RNA-binding domain, RBD 6 91 IPR035979 GO:0003676
Phco8g01242 1119 Gene3D - 2 84 IPR012677 -
Phco8g01242 1119 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 93 IPR000504 GO:0003723
Phco8g01242 1119 PANTHER RNA-DEPENDENT RNA POLYMERASE 10 1113 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g01242 Phco-Chr8 13013085 13017245 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g01242 8 13013085 13017245 Phco8g01242 8 13013085 13017245 ECH