Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00849 ATGGCTCTAACTCTTCGTTCTTCAATTTCTTTTATTAATCAGAAGGAAACCAAAATCCTTAAAACTTCTGATGATGTCCCTGCGATACTTAGTTTTGCAAAGCTTAAACCATCGTTTCGTCTCCGAGTGAAAAATTCCATGCAAGAAGCACACCATGCACGCCACAACAGCTTCAATTCTGAAGCAAGGAGAAACGAAAAATGGGAGAAGGTGCATGCTCCTTCGGTGGCTCATAGTCACAGTAATTCGAAGAGAGTACCTGTGTACGTGATGCTGCCACTAGACACTGTAACAATGGGAGGAAGCTTGAATAAGCCCAGAGCAATGAATGCAAGTTTGATGGCCCTGAAGAGTGCAGGAGTGGAAGGCGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAGGACGGGCCTTTGAAGTACAACTGGGAACCCTATGCTGAGCTTGTGCAGATGGTACAGATGCATGGTTTGAAGCTTCAAGTTGTTATGTCTTTCCATCAGTGTGGCGGAAATGTTGGAGACACTTGCAGCATTCCTCTACCACCATGGGTGCAGGAAGAAATCAGCAAGAACCCTGACCTGGTTTACACAGACAGATCAGGTAGGAGGAATCCTGAGTACATCTCATTAGGCTGTGATTCAGTTCCTATTCTAAGAGGAAGGACTCCCCTCCAAGTGTACGCCGACTACATGAGAAGTTTTCGTGACAGATTCCAAGATTACTTAGGCAGTGTTATCGTGGAAATACAAGTTGGCATGGGTCCATGTGGAGAACTGAGATATCCATCATATCCAGAAACAAATGGAACTTGGAGGTTTCCCGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCCTCCTTGGCAGCAGCAGCCGAGGCCATTGGAAAGAAAGAATGGGGAGGAGGTGGACCCCATGACTCTGGCCAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAAAAGGGAAGGGACGTGGAACACTGAATATGGACGGTTCTTTCTAGAGTGGTACTCTGGCAAATTGCTAGAACATGGTGAGAAGATTCTCGTATCAGCCCAAGGAATATTCCATACATCAGGGGTCAAACTATCAGGGAAAGTTGCTGGAATCCATTGGCACTACAGAGCAAGGTCACACGCAGCTGAACTAACTGCTGGCTACTATAACACGCGGAATAACGATGGGTATATGCCCATAGCCAGAATGCTGGCAAAACATGGAGTTGTCTTCAATTTCACCTGCATGGAAATGAAAGACAGAGAGCAGCCTGACTTTGCTAACTGCTCACCTGAAGGGTTGGTTCGGCAGGTGAAGATGGCAACAACAACAGCTAGAGCAGAACTTGCTGGAGAAAACGCATTGGAGAGATATGATGCAGATGCATATGCTCAAGTTTTGTCAACAAGTAAATCCGAATCTAGCAACGGATTGGCAGCATTCACTTATCTAAGAATGAACAAGAGGTTGTTTGAAGGTGAAAACTGGCGGCACCTAGTGGATTTTGTAAGAAGCATGTCTGAAGGTGGTAGGACAGAGAGACTTCCGGCATCTGATTCCCATGGGAGTGATCTTTATGTTGGGCACATCAAATCAACACAGGAGAAGCACACAAAAGAGGCTGTTCTTGTGTAA 1647 0.4542 MALTLRSSISFINQKETKILKTSDDVPAILSFAKLKPSFRLRVKNSMQEAHHARHNSFNSEARRNEKWEKVHAPSVAHSHSNSKRVPVYVMLPLDTVTMGGSLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEPYAELVQMVQMHGLKLQVVMSFHQCGGNVGDTCSIPLPPWVQEEISKNPDLVYTDRSGRRNPEYISLGCDSVPILRGRTPLQVYADYMRSFRDRFQDYLGSVIVEIQVGMGPCGELRYPSYPETNGTWRFPGIGEFQCYDKYMKASLAAAAEAIGKKEWGGGGPHDSGQYNQFPEDTGFFKREGTWNTEYGRFFLEWYSGKLLEHGEKILVSAQGIFHTSGVKLSGKVAGIHWHYRARSHAAELTAGYYNTRNNDGYMPIARMLAKHGVVFNFTCMEMKDREQPDFANCSPEGLVRQVKMATTTARAELAGENALERYDADAYAQVLSTSKSESSNGLAAFTYLRMNKRLFEGENWRHLVDFVRSMSEGGRTERLPASDSHGSDLYVGHIKSTQEKHTKEAVLV 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00849 548 Pfam Glycosyl hydrolase family 14 89 506 IPR001554 GO:0000272|GO:0016161
Phco8g00849 548 ProSitePatterns Beta-amylase active site 1. 167 175 IPR018238 GO:0000272|GO:0016161
Phco8g00849 548 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 48 519 IPR001554 GO:0000272|GO:0016161
Phco8g00849 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 383 394 IPR001554 GO:0000272|GO:0016161
Phco8g00849 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 438 460 IPR001554 GO:0000272|GO:0016161
Phco8g00849 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 120 134 IPR001554 GO:0000272|GO:0016161
Phco8g00849 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 330 349 IPR001554 GO:0000272|GO:0016161
Phco8g00849 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 366 382 IPR001554 GO:0000272|GO:0016161
Phco8g00849 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 141 159 IPR001554 GO:0000272|GO:0016161
Phco8g00849 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 255 277 IPR001554 GO:0000272|GO:0016161
Phco8g00849 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 163 184 IPR001554 GO:0000272|GO:0016161
Phco8g00849 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 401 424 IPR001554 GO:0000272|GO:0016161
Phco8g00849 548 Gene3D Glycosidases 78 546 - -
Phco8g00849 548 PRINTS Plant beta-amylase signature 404 414 IPR001371 GO:0000272|GO:0016161
Phco8g00849 548 PRINTS Plant beta-amylase signature 486 500 IPR001371 GO:0000272|GO:0016161
Phco8g00849 548 PRINTS Plant beta-amylase signature 245 254 IPR001371 GO:0000272|GO:0016161
Phco8g00849 548 SUPERFAMILY (Trans)glycosidases 83 513 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00849 Phco-Chr8 8626944 8629685 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00849 8 8626944 8629685 Phco8g00849 8 8626944 8629685 ECH