Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00829 ATGGAACTTAGTTTTAAGCACCAACTTCCCCTTCTCTCTGTCATACTATTTCTACCTGCACTCTGTATGTCACAGGACACTTTTACCTGCTCCAGAGCAACATACTATGGTAGCCCTGATTGCTATGGGAATCCAAAGGGAGCTTGTGGCTTTGGCGAATATGGAAGAACGGTGAATGATGGAAGTGTGGCAGGAGTGTCTAAGCTGTGGAGGAATGGAAGCGGCTGTGGAGCATGCTATCAGGCAAGGTGCAAGATACCCCAATATTGCGATGAAAATGGAGCATTCGTGGTGGTAACAGATTATGGTGAGGGAGACAGAACAGACTTCATCATGAGCCCACGCGCCTTCTCGAGATTGGGACGCAACGCAGATGCATCTGCAGAGTTGTTCAAATATGGTGTTGTGGATATTGAATACAGAAGGGTCCCATGCAGTTATTCTGGCTACAATGTCGTGTTTAAGGTCCATGAACACAGCAGAAACCCTGACTACTTTGCTGTCGTGGTTCTCTACGTTGGTGGAACATACGATGTCACTGCTGTTGAGTTGTTTCAGCAAGACTGCCAGGAATGGAAGCCATTGCGCAGGGCCTCTGGGGCAATGTTTGACTATAGCAACCCACCAAGTGGTCAAATCTACTTGAGGTTCCAAGTTAGTGACAGTGCAGGGATTTATTGGGTTCAGTCCAGGAAAGCTGTCTCTAGTGATTGGACGGCCGGAGCAACATATGACACCATGGTGCAGCTTAATTAG 756 0.4762 MELSFKHQLPLLSVILFLPALCMSQDTFTCSRATYYGSPDCYGNPKGACGFGEYGRTVNDGSVAGVSKLWRNGSGCGACYQARCKIPQYCDENGAFVVVTDYGEGDRTDFIMSPRAFSRLGRNADASAELFKYGVVDIEYRRVPCSYSGYNVVFKVHEHSRNPDYFAVVVLYVGGTYDVTAVELFQQDCQEWKPLRRASGAMFDYSNPPSGQIYLRFQVSDSAGIYWVQSRKAVSSDWTAGATYDTMVQLN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00829 251 Pfam Expansin C-terminal domain 152 232 IPR007117 -
Phco8g00829 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Phco8g00829 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Phco8g00829 251 CDD DPBB_EXLB_N 31 145 - -
Phco8g00829 251 Gene3D - 146 247 IPR036749 -
Phco8g00829 251 Gene3D - 19 145 IPR036908 -
Phco8g00829 251 PANTHER EXPANSIN-B3 18 249 - -
Phco8g00829 251 SUPERFAMILY Barwin-like endoglucanases 16 149 IPR036908 -
Phco8g00829 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Phco8g00829 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Phco8g00829 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Phco8g00829 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Phco8g00829 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Phco8g00829 251 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00829 Phco-Chr8 8409782 8411197 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01301 4 11154742 11156641 Phco8g00829 8 8409782 8411197 PCT