Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00637 ATGATGCAGCAGAGAGAGATAGTAGGAGAGGGAGAGGCGGTGGTGGCGTGCAGTGACAAGAGCATGAAAATTGGGGCGTCAATGTGGGACTTGGAAACGGGAGAAAAACTGCTTCACATTCCAAGCTGTGCCTCGCCACCTTTCGGCATCTTGTGCTTGAGGAATCGCTTCCTCGTGGCGTCGCAACTGAACAAACACGGGTCCGTTGGCGATGGAGCCGTTGCAGTTTGGTCCTTCAACAAGCCTCAACAACCACTTATGTGTTACACAGTGGAGGCTATTGGGACACTTTCTTGTACAAATGATGGCATATATCTTGTTGGAGGAGGTCGTTCTGGAACTGCTTATCTATGGGATGTGACCAATGGAAAATTGTTGAAGACTTGGATGGCTTATAATAAACCTTTAAACTGCATGTTATTTTCATATGACAACTCTTTTCTCATTTCTAGCTCAGGTGATGGAATGATTTGTGTTTGGTCCATGATTAGTTTGTTAGACATAGAAGAAACGAGAAGTTCGCCACCTCCAATGCATTGTTTGTCAGGACATACATCCTCCATAACAGGTCTTTTAACTACACCAAATAGTTACTTCTCGGTCTTAATATCAAGCTCCCTTGATGGCACATGCAAGGTTTGGGATTTTATCTCAGGAAAGCATATGCAAACTCAAGTTTATTCTTTGGCCATAACTGCTATTGCCCTTCACCAAAGAGAAAGTCTTTTGTTTTGCGGAACAGAAAAAGGAACAATATCTGTCGAGAAGCTCGATGTTGGTCGGGGAGAAGGTCCTTTTATTGTCACTGAAGTCCAACCACTTGAATTGAAAGGACACAATGGAGCCATTACTGCCTTAACCGCATCTCGATCATGCCTAATATCTGCCTCTGAAGATTGTTCGATTTGCGTCTGGAACATCTCCAGTTGGGAAATCATTAGAAGGTTTAGTCTCCAAAAAGGGAAAGTAACCAATCTTGTGGTAGTTTCACGATCTTGGTTACATTTTACATCAAAAAACAGGAGAGCCTCCAATGAATATACTGTTTCTCAACTTGACAAGCATCCGCAAAACTCAATCAAGGGGACTGCCATCCTCCATTCCTTATGTCCACCCTACAGAGGAAATCAAACTAGCATTGATAGTTCTGGTTTATTGAAACAGAAGATTGTTGAAAAACAGAAAGTAGATGTAGCATCAGTGACAAAGTTAGAAATGAGAGTGGAAGCAAGTGCAGAGAATTGTGCATGGGCAACAAGCATGGCAAAACATGTGATGGTGATAAACAAACAATTGAAGTCACACCTATTAGACATGATGCAGCATAGATTGTTTCGTCCAAACAACACCAACTTGCGAAAAACTAGTAGAAAGAAACCCAAAACTTAG 1389 0.4219 MMQQREIVGEGEAVVACSDKSMKIGASMWDLETGEKLLHIPSCASPPFGILCLRNRFLVASQLNKHGSVGDGAVAVWSFNKPQQPLMCYTVEAIGTLSCTNDGIYLVGGGRSGTAYLWDVTNGKLLKTWMAYNKPLNCMLFSYDNSFLISSSGDGMICVWSMISLLDIEETRSSPPPMHCLSGHTSSITGLLTTPNSYFSVLISSSLDGTCKVWDFISGKHMQTQVYSLAITAIALHQRESLLFCGTEKGTISVEKLDVGRGEGPFIVTEVQPLELKGHNGAITALTASRSCLISASEDCSICVWNISSWEIIRRFSLQKGKVTNLVVVSRSWLHFTSKNRRASNEYTVSQLDKHPQNSIKGTAILHSLCPPYRGNQTSIDSSGLLKQKIVEKQKVDVASVTKLEMRVEASAENCAWATSMAKHVMVINKQLKSHLLDMMQHRLFRPNNTNLRKTSRKKPKT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00637 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 315 IPR001680 GO:0005515
Phco8g00637 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 309 - -
Phco8g00637 462 SUPERFAMILY WD40 repeat-like 29 327 IPR036322 GO:0005515
Phco8g00637 462 PANTHER WD-REPEAT PROTEIN 18 12 441 IPR045227 -
Phco8g00637 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 162 IPR001680 GO:0005515
Phco8g00637 462 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 215 - -
Phco8g00637 462 SMART WD40_4 269 306 IPR001680 GO:0005515
Phco8g00637 462 SMART WD40_4 174 215 IPR001680 GO:0005515
Phco8g00637 462 SMART WD40_4 122 161 IPR001680 GO:0005515
Phco8g00637 462 SMART WD40_4 82 119 IPR001680 GO:0005515
Phco8g00637 462 SMART WD40_4 218 256 IPR001680 GO:0005515
Phco8g00637 462 Pfam WD domain, G-beta repeat 275 306 IPR001680 GO:0005515
Phco8g00637 462 Pfam WD domain, G-beta repeat 127 161 IPR001680 GO:0005515
Phco8g00637 462 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Phco8g00637 462 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Phco8g00637 462 PRINTS G protein beta WD-40 repeat signature 293 307 IPR020472 -
Phco8g00637 462 PRINTS G protein beta WD-40 repeat signature 148 162 IPR020472 -
Phco8g00637 462 ProSitePatterns Trp-Asp (WD) repeats signature. 293 307 IPR019775 -
Phco8g00637 462 Gene3D - 4 227 IPR015943 GO:0005515
Phco8g00637 462 Gene3D - 228 341 IPR015943 GO:0005515
Phco8g00637 462 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00637 Phco-Chr8 6369486 6375105 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00637 8 6369486 6375105 Phco8g00637 8 6369486 6375105 ECH