Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00465 ATGGAGAAGCTGGCTTCTTCAACTGCAACCGTTCCCACGCAAAACTTCCTCTTTCAACTTCAACACTCTCTCTTTCCCATTTGCGCCTTCGCTACCTTCCACCGGAACCCCACCCAATCCCTCTCCCACCTCTCTTCCAGAACCAGACACCGCCGCTTCCGAGCATTCCACGCCAAACAAGACCACCTCTGGGTCGGCGAAGAAGAATTGAAACTACAGTTAAAGGAAGCAGAACAAGAAGAAGAAGATTCGTATTTGGACGAGGACGACTCGTCTTTCTTGTCCCTCAGCGATAAGCCTGACCGGAACATCGCCTTGCTCGACGATTACGAGACCGAGGAGCTTGACTTCGATACTGGTCCCGACCACCGGAGCGGATATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCCAACCAAATGCTTGGTCAGAAGTTGTCAATAGTTACTGATAAACCTCAAACAACCCGGCATCGAATTCTGTGTATATGTTCTGGAACCGATTACCAGATGATACTCTATGACACACCTGGTGTTCTACAGAAGGAAATGCACATGTTAGACTCAATGATGATGAAAAATGTTCGCAGTGCAGCAGTTAATGCTGACTGTGTATTGGTTCTTGTGGATGCACGTAAAGCTCCTGAAAAAATTGATGGATTGTTGGAAGAAGGCATAGGAGACCTCAAAGATAAACCCCCCACTCTATTGATTATAAACAAGAAGGACCTTGTTAAACCTGGCGAACTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGATGTTGATGAGGTTATACCTGTTAGTGCCAAATATGGTCAGGGGGTTGAAGATGTAAAGGACTGGATACTGTCAAAGATTCCCAATGGACCAGCTTATTATCCAAAGGATATAGTCAGTGAACATCCAGAAAGATTTTTTGTGGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATACGCATGTCAGGTAAATGTTGTAAACTATAAAGCTCGGCCGAATGCAAAAGATTACATACAAGTAGAGATTTTGGTTGAGAAAAACTCACAGAAGATTATCCTTATTGGAAGAGAAGGAAAGGCTTTGAAACTGCTTGCGATGGCTGCTCGCCTTGATGTTGAAGATTTTTTACAGAAGAAAGTTTATCTTGAGATTGAAGTAAAGATTAAAGAAAATTGGCGACAAGATGAAGGGCTTCTAAAGCACTATGGTTATGGGGGTCAGATACGTGTTATATAA 1272 0.43 MEKLASSTATVPTQNFLFQLQHSLFPICAFATFHRNPTQSLSHLSSRTRHRRFRAFHAKQDHLWVGEEELKLQLKEAEQEEEDSYLDEDDSSFLSLSDKPDRNIALLDDYETEELDFDTGPDHRSGYVALLGKPNVGKSTLANQMLGQKLSIVTDKPQTTRHRILCICSGTDYQMILYDTPGVLQKEMHMLDSMMMKNVRSAAVNADCVLVLVDARKAPEKIDGLLEEGIGDLKDKPPTLLIINKKDLVKPGELAKKLEWYEKFTDVDEVIPVSAKYGQGVEDVKDWILSKIPNGPAYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVNYKARPNAKDYIQVEILVEKNSQKIILIGREGKALKLLAMAARLDVEDFLQKKVYLEIEVKIKENWRQDEGLLKHYGYGGQIRVI 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00465 423 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 124 294 IPR030388 GO:0005525
Phco8g00465 423 Gene3D - 306 420 IPR015946 -
Phco8g00465 423 NCBIfam GTPase Era 126 399 IPR005662 GO:0003723|GO:0005525
Phco8g00465 423 FunFam GTPase Era 305 419 - -
Phco8g00465 423 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 301 416 IPR009019 GO:0003723
Phco8g00465 423 Hamap GTPase Era [era]. 123 416 IPR005662 GO:0003723|GO:0005525
Phco8g00465 423 FunFam GTPase Era 121 304 - -
Phco8g00465 423 Pfam 50S ribosome-binding GTPase 128 245 IPR006073 GO:0005525
Phco8g00465 423 Coils Coil 67 87 - -
Phco8g00465 423 Pfam KH domain 328 405 IPR004044 GO:0003723
Phco8g00465 423 Gene3D - 121 305 IPR027417 -
Phco8g00465 423 NCBIfam small GTP-binding protein domain 128 287 IPR005225 GO:0005525
Phco8g00465 423 ProSiteProfiles Type-2 KH domain profile. 325 402 IPR004044 GO:0003723
Phco8g00465 423 PANTHER GTPASE ERA 78 408 IPR005662 GO:0003723|GO:0005525
Phco8g00465 423 CDD KH-II_Era 314 400 - -
Phco8g00465 423 CDD Era 123 291 IPR030388 GO:0005525
Phco8g00465 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 325 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00465 Phco-Chr8 4401323 4405726 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00465 8 4401323 4405726 Phco8g00465 8 4401323 4405726 ECH