Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00458 ATGTCATTCCTTTCCTCTTCAACGCCCGATTCAAACCTCGCCACCGCCAAGGCGGTCCTCTCGACGGCGGCCTCGGTGGCCGCCACTGCAATGGTGATTCGCTCGGTGGCCAGTGAGCTCCTCCCGCCGGAGTTCATGTCGTACGTCCGAGATGGCTTTCGCAGCGCGCTGTCGCGGTTCTCATCGGAGACAACGATGGTGATCGAGGAGTTCGACGGCCTCGTGAGCAACCAAATCTACGAGGCCGCGGAGACTTACCTCGGTACCAAAATCTCCCCTTCCACCCAGAGACTCAAGGTGACCAAACCCGAAACGGATGACACCTTCATCCTCACAATGGAGCGCAACGAGTGCCTCGACGACGTGTTTAACGGCGTCAAGTTTAACTGGGTCCTGGTGTGCCGTCAAGTGGAGACCCGACACTTCCACAACCCGCGCGACCTGAACGCCTCTTTGAAATCGGAGGTTCGGTCCTTGGAACTGAGCTTCCACAAGAAGCACAAAGGCATGGTCCTCAACACCTACCTTCCCTTCATTCTGAAGGAGGCCAAGTCCTTGAAGCAGGCGACGAAGGCCTTGAGGATCTTCACCGTGGATTACAACTACATGTACGGAAACCCCAACGACGCCTGGGCTGGGATCAATCTGGACCACCCCGCGACGTTTAACACGCTGGCTCTGGAGCGTGATGTGAAGGAGTTTGTGATGAGGGATTTGGAGAGGTTTGTGGCGAGGAAGGAGTATTATAGAAAAGTTGGGAAGGCCTGGAAGAGAGGGTACTTGCTCTATGGACCTCCCGGTACAGGCAAATCCAGTTTGATTGCTGCTATGGCTAATTACTTGCGCTTTGATGTCTATGACTTGGAGCTCACCGAGTTGCAGTCCAATTCCGAGCTCAGGAGGTTGCTCATTGCCATGGCTAATAGGTCCATTCTCGTTGTTGAGGACATTGATTGCACTATTCAGTTTCACGATCGCAGAGCACAGTCCGCACCCTCTTCCTCTGCAAATAATAACGACAAACAGGTTACACTATCGGGGTTGCTGAATTTCGTTGACGGGTTATGGTCAAGTTGTGGGGACGAGAGGATAATAGTGTTCACAACAAACCACAAGGACAAGCTTGATCCTGCTTTGCTCCGCCCTGGTCGCATGGATGTTCATATTCACATGTCCTATTGCACTCCCTGTGGTTTTGGGCAGCTAACTTCCAATTACCTCGGAATTAAAGAGCATGATCTCTTCCCACAGATTGAGGAAGAAATTCAGAAAACCCAGGTGACTCCAGCTGAAGTGGCAGAACAGCTTCTGAAGAGCAGCGACATTGAAACTTGTCTTAAACAGCTTATAGATTTCCTAAGAAAAAAGAAAGAAACACAGGAACTGGAGGCTAAAGAGAAGGAACAGGAGGCCAAAGATAAAGAGGAACAACAGAAGGAGCTTGATGACGGTGGTAAAGGAGAAGAGGTTGATGATGACGAAAAGAGAAGGACAACTGAGTTGAACAACAACAATTTGAAGTATACGTATTTTGCTTTTTCACTTTCTGTTTTGTTAAATCCACGAGAGAATACTTTACTGGATGACCAAAGGACTGTGACTGGTGTTTGGGAGTGGGTGCTAATTTGTGAAACCGTGTCCACCATATTTGCAGCTAGAAAAGAAATTAATGAAGACATTTCAGAAAATTTGGTATTTTGGGCCGGGCTGAACCTAGCCCAGCCCACGTCCGGTTCCCTGTCTTCTTCCTTCGTGGATGACGAAGGTAGCAGCTACAGCTTCCATCAGCGAAAGGAACAAAACAAAGGCATCGCAGCAAACCTTCAATTTCCGCTTCCTTCAATTTTTGAACAAATTTCTCCGTTCTCAACTTTATCTATCACACACATCGAAAAAGATCCCTGCGCCTTCGCACACATCTTAACGTTAGCAAAGATGGATCCAAACGCGGTGAAGTCCACTCTTTCCAATTTGGCTTTTGGAAACGTAATGGCCGCAGCTGCCCGCGATTATCAGAAGGAAATGCTTGCTCAACAGAAGGCAGAGGCATCAAGTTCAGTAAATGAGGACGTTGACCTTGATGAGTTAATGGATGATCCTGAGTTGGAAAAGTTGCATGCAGATAGGATTGCAGCTCTTAAGAAAGAAGTAGAGAAACGAGAGGAATGGAAGAAGAAAGGTCATGGAGAATACAGGGAAATAACTGAGGGTGATTTCTTAGGCGAAGTCACTGGAAGTGAAAAGGTGATTTGTCACTTCTACCATAAGGAGTTCTATAGATGCAAGATAGTTGATAAGCATTTAAAGTCCCTTGCACCAAAGCATATTGATACGAAATTCATTAAGCTTGATGCAGAGAATGCACCTTTCTTTGTTACAAAACTGGCTGTCAAGACTTTGCCTTGTGTCATACTGTTCAGACAAGGAGTTGGTGTAGATAGATTGGTAGGATTTCAAGATTTGGGAGGGAAAGATGATTTTACTACAAGAACACTGGAGGCTCTGCTGATAAAGAAAGGTATAATTGTGGAGAAGAAAGATGAGGATGATGAAGATGATGAACATCTTGACAGTACACGCAGAGTGGTCAAATCCTCCACAATTGCTGGTTCTGATTCTGATTCTGAATAA 2631 0.4702 MSFLSSSTPDSNLATAKAVLSTAASVAATAMVIRSVASELLPPEFMSYVRDGFRSALSRFSSETTMVIEEFDGLVSNQIYEAAETYLGTKISPSTQRLKVTKPETDDTFILTMERNECLDDVFNGVKFNWVLVCRQVETRHFHNPRDLNASLKSEVRSLELSFHKKHKGMVLNTYLPFILKEAKSLKQATKALRIFTVDYNYMYGNPNDAWAGINLDHPATFNTLALERDVKEFVMRDLERFVARKEYYRKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLRFDVYDLELTELQSNSELRRLLIAMANRSILVVEDIDCTIQFHDRRAQSAPSSSANNNDKQVTLSGLLNFVDGLWSSCGDERIIVFTTNHKDKLDPALLRPGRMDVHIHMSYCTPCGFGQLTSNYLGIKEHDLFPQIEEEIQKTQVTPAEVAEQLLKSSDIETCLKQLIDFLRKKKETQELEAKEKEQEAKDKEEQQKELDDGGKGEEVDDDEKRRTTELNNNNLKYTYFAFSLSVLLNPRENTLLDDQRTVTGVWEWVLICETVSTIFAARKEINEDISENLVFWAGLNLAQPTSGSLSSSFVDDEGSSYSFHQRKEQNKGIAANLQFPLPSIFEQISPFSTLSITHIEKDPCAFAHILTLAKMDPNAVKSTLSNLAFGNVMAAAARDYQKEMLAQQKAEASSSVNEDVDLDELMDDPELEKLHADRIAALKKEVEKREEWKKKGHGEYREITEGDFLGEVTGSEKVICHFYHKEFYRCKIVDKHLKSLAPKHIDTKFIKLDAENAPFFVTKLAVKTLPCVILFRQGVGVDRLVGFQDLGGKDDFTTRTLEALLIKKGIIVEKKDEDDEDDEHLDSTRRVVKSSTIAGSDSDSE 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00458 876 CDD RecA-like_BCS1 235 391 - -
Phco8g00458 876 Coils Coil 450 484 - -
Phco8g00458 876 Gene3D - 212 389 IPR027417 -
Phco8g00458 876 MobiDBLite consensus disorder prediction 463 499 - -
Phco8g00458 876 PANTHER BCS1 AAA-TYPE ATPASE 21 461 - -
Phco8g00458 876 Pfam ATPase family associated with various cellular activities (AAA) 261 392 IPR003959 GO:0005524|GO:0016887
Phco8g00458 876 ProSitePatterns AAA-protein family signature. 363 381 IPR003960 GO:0005524|GO:0016887
Phco8g00458 876 SMART AAA_5 256 395 IPR003593 GO:0016887
Phco8g00458 876 CDD Phd_like_TxnDC9 726 836 - -
Phco8g00458 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 444 IPR027417 -
Phco8g00458 876 Pfam Domain associated at C-terminal with AAA 41 134 IPR025753 -
Phco8g00458 876 Gene3D - 390 460 - -
Phco8g00458 876 SUPERFAMILY Thioredoxin-like 684 842 IPR036249 -
Phco8g00458 876 Gene3D Glutaredoxin 722 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00458 Phco-Chr8 4287012 4295446 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00458 8 4287012 4295446 Phco8g00458 8 4287012 4295446 ECH