Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00420 ATGAGAACACGAAATGCTGATCCAGCTTCTAAATCCGCAATCCCTAAGAAGACGCCACCGCCGAGGAAATCCCCTGCGGCGAAGCGCACCCCCGCCACCAAAACCAGAAGCACACAGAAGAAAGAGGTCTCACCCGCCCCCGATTCCAACACCGATCAACCTCCTCTGGAACAGAAACCGGTAGCTAGTGGTAGCAGTACAAAAACTGGGAAAAGGAAGGCTCCAGGGAGACCTAGAGTTAAAGCAATTGATACTCCGAATTTGGAAGAACAACGTGAGGCAGTAGCTGACGAAGCTCCAATTGAAGACAAAACCGAGGCTGCAGAGAAAGTGAAAGATGTTGAAGTTGTTGATGCAGATAATATTGAGGGTGAGAAAGAGGGGGAACAAGGTGTTGGGTTTTCTGAAGAGAAGGAAGATAAGTCGATGGAAGTGGATGGACCTGTTGTTGAAAAGGGAAATGACATAATGGAAGTTGAAGTAAATGATTCACAGGATGCTTCTGTTTCTTTTAAGCGACTAGGGCGGCCCATTATGGACCTCAATATATCTGCAGATAATGAAGATTGTACTGGTGAAAAGGAGGGTGAGAAAGTAAAGGAAGTGTTCAAAAATCAAGAGGGGGACAAAGGAAAGGATAAGTTGAAAGAACAGGAAGTAGATGAAGGGAAGGAAGAGGTGGAAGTGCATGAAGGGGACAAAGGAAAGGAAGAGTTGAAAGAACTGGAAGGAGTCAGCGGAATTGGAGAGTTGAAAGAAGTCGATGGAGAGAAAGAAAAGGAAGAGTTGAAAGAGCTCGATGGAGTGAAAGGTAAGGAAGAGTTGAAAGAACATGAACCAGAGAAAGGTAAGGAGGAACTGATAGAATGTGAAGGAGAGAAAGGTAAAGAAAAGATGATAGAACAAGTAGGACACAAAGGAAAGGTTGAATTGAAAGAACAGGAAGTAGACAAAGGAAAGTTGAAAGAGCAGGATCCAGAGAAAGCAGAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACACTGTTCCTCTTGGTCTAGAAGTGAAAGCCCAGATGCAAATAGAAGATGCTAATCCCATTAAAGATGGTGGTGAAGGACCAAAGAGTGGTGAAAAGTTAGATCTTCGAGAACAAGGGAGGGTGGAGCTTTCTGAAGAAGATCCGGAGGAAGATCAAGAAGAACCTCTAGAAGAAATTGAGGCATTGGAGCAGGAGCATAGGGAACTGGAGGCCATTGCAAATCAGCGAAAGATTAAAAAAGAGCATGAGATTTTTGTTGGTGGGTTGGATCGTGATGCTACGGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATTGGGGAGATAGTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCTAAGAAAGCTTTATCTGAAATGAAGAACCCTGTTATACATGGTAAACGGTGTGGCACTGCACCTAGCGAGGATAATGACACATTATTCTTGGGAAACATTTGCAATACTTGGACAAAAGAAGCTATTAAACAGAAGCTAAAGGACTATGGTACTGAAGGGGTTGAAAACATTACGCTTGTCCCAGATGTTCAACATGAGGGCTTGAGCCGGGGCTTTGCATTTGTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCTGATGTTATCTTTGGCCATGCTGAACGAACTGCCAAGGTAGCCTTTGCTGAACCCATACGTGAACCTGACCCAGAGATAATGGCGCAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACACTGGGACGAAGATCATGTTAGGGAGTTGTTTAAATCTTATGGTGAAATTGTGAGAATCGTGTTAGCACGCAATATGTCTACTGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTTTACACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAGTCAGAAATGGGTGATGAGGCATCAAAGATTAAAGTGAGAGCTAGACTCTCAAACCCTCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCGAATTGGTCATGCTAGGAGTGCTGCCTTTTCAAGACCAGGGAGGGGGTTTGGACGAGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAACAGGGATAGGAGTTTCTATCATGGTGGACACAGTCAAATTGGAAGAATGGGATTTCGGGATGACTTTGATTTTAATATGCATCCGGATTTCCATCAAAGGCAATTTGGTCCGCAAGGAGCTATGAGGGGTGGACATTATGTTGGTAGCCGAGGTGCTTCATTTGCTGGACCATCTAGACCTTATCACGATAGAGCATGGTATAGTATGCCTGATGGAGGCCCCAGTGAGCCTATTCCTCCAAGGAGGACCTACTCCCCAGGTGGACAATTTGACATGCCTTTTGTGGGAAGACATTTTGATGATCCATATCTATATGATGACAATATGCACGGAATGAAACGTCCGTTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGACTTCGTCCCCGATTGGATTATGCAGATCCTCCTATATTTCATGGAACTCGTCACAATGATTCTTTTGGGGCTGGCAGCACACAGTACCCGCGGGACTATTATGGTTCCGATTACGGTAGAGGTTCATATTCATCTTATTATGGGGGTGATGGCTCACATGGACATGGATACTATTATTAG 2760 0.4406 MRTRNADPASKSAIPKKTPPPRKSPAAKRTPATKTRSTQKKEVSPAPDSNTDQPPLEQKPVASGSSTKTGKRKAPGRPRVKAIDTPNLEEQREAVADEAPIEDKTEAAEKVKDVEVVDADNIEGEKEGEQGVGFSEEKEDKSMEVDGPVVEKGNDIMEVEVNDSQDASVSFKRLGRPIMDLNISADNEDCTGEKEGEKVKEVFKNQEGDKGKDKLKEQEVDEGKEEVEVHEGDKGKEELKELEGVSGIGELKEVDGEKEKEELKELDGVKGKEELKEHEPEKGKEELIECEGEKGKEKMIEQVGHKGKVELKEQEVDKGKLKEQDPEKAEGEETNLFGHEENTVPLGLEVKAQMQIEDANPIKDGGEGPKSGEKLDLREQGRVELSEEDPEEDQEEPLEEIEALEQEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGTEGVENITLVPDVQHEGLSRGFAFVEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEIVRIVLARNMSTAKRKDYGFVDFFTHEAAVACVDGVNKSEMGDEASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSAAFSRPGRGFGRGRQPFNNRGNFNRDRSFYHGGHSQIGRMGFRDDFDFNMHPDFHQRQFGPQGAMRGGHYVGSRGASFAGPSRPYHDRAWYSMPDGGPSEPIPPRRTYSPGGQFDMPFVGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTRHNDSFGAGSTQYPRDYYGSDYGRGSYSSYYGGDGSHGHGYYY 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00420 919 Gene3D - 357 500 IPR012677 -
Phco8g00420 919 MobiDBLite consensus disorder prediction 187 285 - -
Phco8g00420 919 SUPERFAMILY RNA-binding domain, RBD 594 700 IPR035979 GO:0003676
Phco8g00420 919 SUPERFAMILY RNA-binding domain, RBD 425 569 IPR035979 GO:0003676
Phco8g00420 919 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 504 589 IPR000504 GO:0003723
Phco8g00420 919 MobiDBLite consensus disorder prediction 710 731 - -
Phco8g00420 919 FunFam Heterogeneous nuclear ribonucleoprotein Q 504 588 - -
Phco8g00420 919 MobiDBLite consensus disorder prediction 77 146 - -
Phco8g00420 919 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 602 682 IPR000504 GO:0003723
Phco8g00420 919 CDD RRM_SF 426 495 - -
Phco8g00420 919 MobiDBLite consensus disorder prediction 301 337 - -
Phco8g00420 919 MobiDBLite consensus disorder prediction 186 285 - -
Phco8g00420 919 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 574 IPR000504 GO:0003723
Phco8g00420 919 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 604 671 IPR000504 GO:0003723
Phco8g00420 919 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 426 494 IPR000504 GO:0003723
Phco8g00420 919 MobiDBLite consensus disorder prediction 1 146 - -
Phco8g00420 919 Gene3D - 503 588 IPR012677 -
Phco8g00420 919 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 424 502 IPR000504 GO:0003723
Phco8g00420 919 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 145 919 - -
Phco8g00420 919 Gene3D - 591 745 IPR012677 -
Phco8g00420 919 FunFam Heterogeneous nuclear ribonucleoprotein Q 375 498 - -
Phco8g00420 919 MobiDBLite consensus disorder prediction 30 70 - -
Phco8g00420 919 FunFam Heterogeneous nuclear ribonucleoprotein Q 589 740 - -
Phco8g00420 919 Coils Coil 401 421 - -
Phco8g00420 919 SMART rrm1_1 603 676 IPR000504 GO:0003723
Phco8g00420 919 SMART rrm1_1 505 582 IPR000504 GO:0003723
Phco8g00420 919 SMART rrm1_1 425 498 IPR000504 GO:0003723
Phco8g00420 919 CDD RRM_SF 604 678 - -
Phco8g00420 919 MobiDBLite consensus disorder prediction 301 398 - -
Phco8g00420 919 MobiDBLite consensus disorder prediction 363 385 - -
Phco8g00420 919 CDD RRM_SF 506 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00420 Phco-Chr8 3799549 3809243 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00420 8 3799549 3809243 Phco8g00420 8 3799549 3809243 ECH