Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00416 ATGGAGTTTTTAATAGACGATAATTTATATTTGTTTAAGTTACATGTTCTATTGCTGCATGATGATGGCACTGTTATTGTTTATGGTGACACTAGGGTTATCGAAGATTGCAGAGCTGCAATGGGACGTGTGATCCGTGCGCAGCGTAAGGGTGCGGGCTCAGTCTTCAAGTCCCACACTCACCACCGCAAGGGTCCGGCTCGCTTCCGCAGCCTCGACTTTGGAGAGCGGAACGGTTACCTCAAGGGTGTCGTCACCGACGTCATCCACGACCCGGGCCGCGGCGCCCCACTTGCCAAGGTTACTTTCCGCCATCCCTTCAGATACAAGAAGCAAAACGAGCTCTTCGTTGCCGCCGAAGGCCTTTATACTGGTCAGTTCATCTACTGCGGCAAGAAGGCCACTCTCGTAGTTGGTAATGTTTTGCCCATTCGCTCTATCCCTGAAGGAGCTGTTATATGTAATGTTGAGCACCATGTCGGTGACCGTGGTGTCTTCGCTAGGGCTTCTGGCGACTATGCCATCGTTATCAGTCACAACCCTGATAATGACACATCTAGGATTAAGCTTCCATCTGGTGCGAAGAAGATTGTCCCGAGTGACTGCAGGGCCATGATTGGGCAAGTTGCAGGTGGTGGAAGAACTGAGAAGCCTCTTCTTAAGGCTGGAAATGCTTACCACAAGTTTAGGGTGAAGAGAAATTGCTGGCCCAAGGTGCGTGGTGTTGCTATGAATCCTGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCACATTGGTCACGCCAGTACTGTCAGGCGTGATGCTCCTCCTGGACAAAAGGTTGGTCTCATTGCTGCTAGGAGGACTGGTCGTCTTAGAGGACAAGCTGCTGCAACTGCTGCCAAGGCTGATAAGGTTTAA 903 0.5105 MEFLIDDNLYLFKLHVLLLHDDGTVIVYGDTRVIEDCRAAMGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKATLVVGNVLPIRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00416 300 ProSitePatterns Ribosomal protein L2 signature. 237 248 IPR022671 GO:0003735|GO:0005840|GO:0006412
Phco8g00416 300 FunFam 60S ribosomal protein L2 210 287 - -
Phco8g00416 300 PANTHER RIBOSOMAL PROTEIN L2 40 295 IPR002171 GO:0003735|GO:0005840|GO:0006412
Phco8g00416 300 SMART Ribosomal_L2_C_2 136 271 IPR022669 GO:0003735|GO:0005840|GO:0006412
Phco8g00416 300 Pfam Ribosomal Proteins L2, C-terminal domain 138 265 IPR022669 GO:0003735|GO:0005840|GO:0006412
Phco8g00416 300 Hamap 50S ribosomal protein L2 [rplB]. 41 286 IPR023672 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Phco8g00416 300 Gene3D - 130 209 IPR014722 -
Phco8g00416 300 Pfam Ribosomal Proteins L2, RNA binding domain 53 130 IPR022666 GO:0003735|GO:0005840|GO:0006412
Phco8g00416 300 Gene3D Ribosomal protein L2, domain 3 210 287 IPR014726 -
Phco8g00416 300 MobiDBLite consensus disorder prediction 250 270 - -
Phco8g00416 300 SMART Ribosomal_L2_2 51 130 IPR002171 GO:0003735|GO:0005840|GO:0006412
Phco8g00416 300 Gene3D - 41 126 IPR012340 -
Phco8g00416 300 FunFam 60S ribosomal protein L2 41 126 - -
Phco8g00416 300 SUPERFAMILY Translation proteins SH3-like domain 139 286 IPR008991 -
Phco8g00416 300 SUPERFAMILY Nucleic acid-binding proteins 40 137 IPR012340 -
Phco8g00416 300 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 29 294 IPR002171 GO:0003735|GO:0005840|GO:0006412
Phco8g00416 300 FunFam 60S ribosomal protein L8 130 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00416 Phco-Chr8 3765644 3770439 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00416 8 3765644 3770439 Phco8g00416 8 3765644 3770439 ECH
Phco4g00876 4 6901836 6903295 Phco8g00416 8 3765644 3770439 PCT